| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avin_06180 |
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| Symbol | rpoC |
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| ID | 7759572 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Azotobacter vinelandii DJ |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012560 |
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| Strand | + |
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| Start bp | 598022 |
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| End bp | 602221 |
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| Gene Length | 4200 bp |
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| Protein Length | 1399 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 643803540 |
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| Product | DNA-directed RNA polymerase subunit beta' |
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| Protein accession | YP_002797844 |
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| Protein GI | 226942771 |
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| COG category | [K] Transcription |
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| COG ID | [COG0086] DNA-directed RNA polymerase, beta' subunit/160 kD subunit |
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| TIGRFAM ID | [TIGR02386] DNA-directed RNA polymerase, beta' subunit, predominant form |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGAAAGACC TGCTGAATCT CTTGAAAAAC CAGGGTCAAC TCGAAGAGTT CGATGCCATC
CGTATCGGTC TGGCTTCGCC CGAGATGATC CGTTCCTGGT CCTTCGGCGA AGTGAAAAAG
CCGGAGACCA TCAACTACCG TACCTTCAAG CCGGAACGCG ATGGCCTGTT CTGCGCCAAG
ATCTTCGGGC CGGTGAAGGA CTACGAGTGT CTGTGCGGCA AGTACAAGCG ACTGAAGCAT
CGCGGCGTGA TCTGCGAGAA GTGCGGGGTG GAAGTCGCTC TGGCCAAGGT GCGCCGCGAG
CGCATGGCGC ATATCGAGCT GGCTTCTCCG GTCGCTCATA TCTGGTTCCT CAAGTCGCTG
CCGTCGCGCA TCGGCCTGCT GTTGGACATG ACTCTGCGCG ATATCGAGCG TGTGCTCTAT
TTCGAGAGCT ATGTGGTGAT CGATCCGGGC ATGACCACCC TGGAGAAAGG TCAGTTGCTC
AACGACGAGC AATATTTCGA GGCCCTCGAG GAGTTCGGTG ACGACTTCGA TGCGCGCATG
GGCGCCGAGG CGGTCCGCGA GCTGCTCAAC CAGATCGACC TGGAGCACGA GATCGGCCGC
CTGCGCGAGG AAATCCCGCA GACCAACTCG GAAACCAAGA TCAAGAAGCT GTCCAAGCGC
CTGAAGCTGA TGGAGGCCTT CCAGGGCTCC GGCAACCTGC CGGAGTGGAT GGTGCTGACC
GTGTTGCCGG TGCTGCCGCC GGATCTGCGT CCGCTGGTAC CGCTGGACGG TGGCCGCTTC
GCGACCTCCG ACCTGAACGA TCTGTACCGC CGGGTGATCA ACCGCAACAA CCGCCTGAAG
CGCCTGCTCG ACCTGGCCGC ACCGGACATC ATCGTGCGCA ACGAGAAGCG CATGCTGCAG
GAGGCGGTTG ACGCCCTGCT GGACAACGGT CGCCGTGGCC GGGCCATTAC CGGCTCCAAC
AAGCGCCCGC TGAAGTCCCT GGCCGACATG ATCAAGGGCA AGCAGGGTCG TTTCCGTCAG
AACCTGCTGG GCAAGCGCGT CGACTATTCC GGCCGTTCGG TGATCACCGT GGGGCCGACC
CTGCGCCTGC ACCAGTGCGG TCTGCCGAAG AAGATGGCAT TGGAACTGTT CAAGCCGTTC
ATTTTCGGCA AGTTGGAAAC CCGCGGCATG GCCACCACCA TCAAGGCGGC CAAGAAGATG
GTCGAGCGCG AGTTGCCCGA GGTCTGGGAC GTGCTCGCCG AGGTCATCCG CGAACATCCC
GTGCTGCTCA ACCGCGCGCC GACCCTGCAC CGCCTGGGTA TCCAGGCGTT CGAGCCGGTG
CTCATCGAGG GCAAGGCGAT CCAGTTGCAC CCGCTGGTCT GTGCCGCCTA CAACGCCGAC
TTCGACGGCG ACCAGATGGC CGTGCACGTG CCGCTGACCC TTGAGGCCCA GCTCGAGGCG
CGCGCACTGA TGATGTCGAC CAACAACATC CTCTCGCCCG CCAACGGCGA GCCGATCATC
GTGCCGTCGC AGGACGTGGT GCTGGGTCTG TACTACATGA CCCGCGAGGC GGTGAACGCC
AGGGGCGAGG GGCGCGTCTT CGCCGACCTG CAGGAGGTCG ACCGGGTGTT CCGGGGCGGC
GAGGCGTCGC TGCACGCCCG CGTGAAGGTG CGGATCAACG AGACGGTCAG GCAGAAGGAC
GGCAGCCTGG TCCACAACAC CCGCATCGTC GACACCACCG TCGGCCGTGC GCTGCTGTTC
CAGGTCGTAC CGGCCGGCTT GTCGTTCGAC GTCGTCAACC AGCCGATGAA GAAGAAGGCG
ATCTCCAAGC TGATCAACCA CTGCTATCGC ACCGTGGGTC TGAAGGACAC CGTCATCTTC
GCCGACCAGC TGATGTATAC CGGTTTCGCC TTCTCGACCC TGTCGGGGGT TTCCATCGGA
GTGAACGACT TCGTCATTCC GACGGAAAAG GCGCGCATCA TCGAAGGCGC CACCGAGGAA
GTGAAAGAGA TCGAGAGCCA GTACGCCACC GGCCTGGTGA CCCAGGGCGA GAAGTACAAC
AAGGTGATCG ACCTGTGGTC GAAGGCCAAC GACGAAGTGT CCAAGGCGAT GATGGCCAAC
CTCTCGAAGG AGAAGGTCAT CGACCGCCAG GGCAACGAGG TCGAGCAGGA GTCGTTCAAC
TCCATGTACA TGATGGCGGA CTCCGGAGCG CGGGGTTCCG CGGCGCAGAT CCGCCAGTTG
GCCGGCATGC GCGGCCTGAT GGCCAAGCCC GACGGCTCGA TCATCGAGAC GCCGATCACC
GCGAATTTCC GCGAGGGCCT GAACGTACTG CAGTACTTCA TCTCCACCCA CGGCGCCCGC
AAGGGCCTGG CGGATACCGC GCTGAAGACC GCGAACTCCG GTTACCTCAC CCGTCGCCTG
GTGGATGTGG CCCAGGACCT GGTGGTGACC GAGATCGATT GCGGTACCGA ACAGGGGCTG
CTGATGACTC CGCACATCGA GGGCGGCGAC GTGGTCGAGC CGCTCGGCGA GCGGGTGCTT
GGCCGGGTCA TTGCCAGAGA TGTGTTCCGG CCCGGTGGCG ACGAGGTCAT AGTGCCGGCC
GGAACCCTGA TCGACGAGAA GTGGGTCGAG TTCATCGAGA TGAACAGCAT CGACGAGGTG
GTCGTGCGTT CGCCGATCAC CTGCGAGACC CGTTACGGCA TTTGCGCCAA GTGCTATGGC
CGCGATCTGG CGCGCGGGCA TCAGGTGAAC ATCGGCGAGG CGGTGGGCGT GATCGCTGCG
CAGTCCATCG GTGAGCCGGG CACCCAGTTG ACCATGCGGA CCTTCCACAT CGGTGGTGCG
GCCAGCCGGA CCTCGGCCGT GGACAATGTC CAGGTGAAGA ACGGCGGCAA CATCCGCCTG
CACAACCTGA AATATGTCGA GCGGAGCGAT GGTGCGCTGG TCGCCGTGTC CCGTTCCGGC
GAACTGGCCG TGGCCGACGA TTTCGGTCGC GAGCGCGAGC GCTACAAGCT GCCGTACGGT
GCGGTGATCT CGGTGAAGGA GGGCGACAAG GTCAGCCCGG GGGCCATCGT TGCCAAGTGG
GACCCGCACA CTCACCCGAT CGTGACCGAG ATGAAGGGTA CCGTGACCTT CGTCGGCATG
GAGGAGGGGA TCACCATCAA GCGCCAGACC GACGAACTGA CCGGTCTGAC CAACATCGAG
GTGATCGATC CGAAGGACCG TCCGGCTGCC GGCAAGGACA TCCGTCCAGC GGTCAAGCTG
GTCGATGCCA GCGGCAAGGA ACTGTTGCTG CCGGGTACCG ACGTGCCGGC CCAGTATTTC
CTGCCGGCCA ACGCCCTGGT CGGCGTGGCC GACGGTGCCG AAGTGGGAGT GGGCGATGTG
ATCGCCCGTA TTCCTCAGGA AACTTCGAAG ACCCGCGACA TCACCGGTGG TCTGCCGCGC
GTTGCCGACC TGTTCGAGGC GCGCCGTCCG AAGGAGCCGT CGATCCTGGC GGAGGTCAGC
GGTACCATCA GTTTCGGCAA GGAAACCAAG GGCAAGCGCC GTCTGGTCAT CACGCCGAAC
GATGGCAGCG AGGCGTACGA GGAACTGATC CCGAAGTGGC GCCACCTCAA CGTCTTCGAG
GGCGAACAGG TGAACCGTGG CGAGGTGATC TCCGATGGTC CGAGCAATCC GCATGACATT
CTGCGTCTGC TGGGTGTCAG CGCTCTGGCC AAGTACATCG TCAACGAGAT CCAGGATGTC
TATCGCCTGC AGGGTGTGAA GATCAACGAC AAGCACATCG AGACCATTCT CCGTCAGATG
CTGCGCAAGG TGGAGATCAC CGAGGCGGGA GACTCGAGCT TCATCAAGGG CGATCAGGTG
GAACTGACCC AGGTGCTCGA GGAGAACGAG CAACTGGCGA CCGAGGATCG TTTCTCGGCG
AAGTACGAGC GCATCCTTCT GGGTATCACC AAGGCATCGC TTTCGACCGA GTCGTTCATT
TCCGCCGCTT CCTTCCAGGA AACCACCCGT GTGCTCACCG AGGCCGCGGT CACCGGCAAG
CGTGACTACT TGCGTGGCCT GAAGGAAAAC GTCGTGGTGG GGCGGCTGAT CCCGGCCGGT
ACCGGCCTGG CCTATCACAG CGAGCGCCGG CGCAAGCGCG ACGCCGAGAA GCCGGTACGG
GTGAGTGCGG AAGAGGTCGA GGCAGCGCTG ACCGAAGCCC TGAACACCAG CGGCAACTGA
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| Protein sequence | MKDLLNLLKN QGQLEEFDAI RIGLASPEMI RSWSFGEVKK PETINYRTFK PERDGLFCAK
IFGPVKDYEC LCGKYKRLKH RGVICEKCGV EVALAKVRRE RMAHIELASP VAHIWFLKSL
PSRIGLLLDM TLRDIERVLY FESYVVIDPG MTTLEKGQLL NDEQYFEALE EFGDDFDARM
GAEAVRELLN QIDLEHEIGR LREEIPQTNS ETKIKKLSKR LKLMEAFQGS GNLPEWMVLT
VLPVLPPDLR PLVPLDGGRF ATSDLNDLYR RVINRNNRLK RLLDLAAPDI IVRNEKRMLQ
EAVDALLDNG RRGRAITGSN KRPLKSLADM IKGKQGRFRQ NLLGKRVDYS GRSVITVGPT
LRLHQCGLPK KMALELFKPF IFGKLETRGM ATTIKAAKKM VERELPEVWD VLAEVIREHP
VLLNRAPTLH RLGIQAFEPV LIEGKAIQLH PLVCAAYNAD FDGDQMAVHV PLTLEAQLEA
RALMMSTNNI LSPANGEPII VPSQDVVLGL YYMTREAVNA RGEGRVFADL QEVDRVFRGG
EASLHARVKV RINETVRQKD GSLVHNTRIV DTTVGRALLF QVVPAGLSFD VVNQPMKKKA
ISKLINHCYR TVGLKDTVIF ADQLMYTGFA FSTLSGVSIG VNDFVIPTEK ARIIEGATEE
VKEIESQYAT GLVTQGEKYN KVIDLWSKAN DEVSKAMMAN LSKEKVIDRQ GNEVEQESFN
SMYMMADSGA RGSAAQIRQL AGMRGLMAKP DGSIIETPIT ANFREGLNVL QYFISTHGAR
KGLADTALKT ANSGYLTRRL VDVAQDLVVT EIDCGTEQGL LMTPHIEGGD VVEPLGERVL
GRVIARDVFR PGGDEVIVPA GTLIDEKWVE FIEMNSIDEV VVRSPITCET RYGICAKCYG
RDLARGHQVN IGEAVGVIAA QSIGEPGTQL TMRTFHIGGA ASRTSAVDNV QVKNGGNIRL
HNLKYVERSD GALVAVSRSG ELAVADDFGR ERERYKLPYG AVISVKEGDK VSPGAIVAKW
DPHTHPIVTE MKGTVTFVGM EEGITIKRQT DELTGLTNIE VIDPKDRPAA GKDIRPAVKL
VDASGKELLL PGTDVPAQYF LPANALVGVA DGAEVGVGDV IARIPQETSK TRDITGGLPR
VADLFEARRP KEPSILAEVS GTISFGKETK GKRRLVITPN DGSEAYEELI PKWRHLNVFE
GEQVNRGEVI SDGPSNPHDI LRLLGVSALA KYIVNEIQDV YRLQGVKIND KHIETILRQM
LRKVEITEAG DSSFIKGDQV ELTQVLEENE QLATEDRFSA KYERILLGIT KASLSTESFI
SAASFQETTR VLTEAAVTGK RDYLRGLKEN VVVGRLIPAG TGLAYHSERR RKRDAEKPVR
VSAEEVEAAL TEALNTSGN
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