Gene Avin_05790 details

Gene Information

• Locus tag: Avin_05790
• ID: 7759535
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Azotobacter vinelandii DJ
• Kingdom: Bacteria
• Replicon accession: NC_012560
• Strand: -
• Start bp: 556295
• End bp: 558199
• Gene Length: 1905 bp
• Protein Length: 634 aa
• Translation table: 11
• GC content: 70%
• IMG OID: 643803499
• Product: transmembrane signal transduction protein
• Protein accession: YP_002797807
• Protein GI: 226942734
• COG category: [T] Signal transduction mechanisms
• COG ID: [COG2199] FOG: GGDEF domain
• TIGRFAM ID: [TIGR00254] diguanylate cyclase (GGDEF) domain

Plasmid Coverage information

• Num covering plasmid clones: 11
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCTTTGT CAGCATGTGG GAGTCAGGGA ACGGGCGAAC GCTTTCCGCG CTGGCGCATC 
TGTGTACGTC TCGCCTTGCT GCTGGGCCTG CTGCACGGGG CCTCGCCGGC GATCGCCGGC 
CGGCAGGACG AGCCCGCCGC CCTGCGCCTG GACGGCAGCG AACGGTCACT GGACCTGCAT 
CCCCACCTGC AGTTGCTGCA CGACCCCGGC GGCCGGCTGC AGGCCGAGGA GGTCATGGCC 
AGCGGCCAGG CGTTCGCCCC GGCGGCCGGT CGCCACGACC TGAACTTCGG CTACACCCGC 
GACATCGTCT GGCTGCGCCT GGATCTCGAA TCACGGGCGA AGGAAGTCCG CGAGTGGCAG 
ATCGAGTTCC TCTACCCCTC CCTCGACCGC ATCGAGCTGT TCGGCATCGG CGAAGCCCCC 
CTGCTGGGCG GCGACCGGGT ACCCGCCGGA CAGCGCGACA GCCCCCACCT GTCGCCGGCC 
TTCAGCGTGC GCCTGGCTCC CGGCGAACGG CGCAGCCTGT TCTTCCGCAC CCAGTCGAGC 
GGCACCCTGA CCCTGGACGC GCAGCTCTGG GAAAGCGCCG CCTTCGCCCG CCACAGCCGT 
CTGACGCTGA TGCTGCAGAG CGGCTACATG GCCATGCTGG CTGCCCTGTG CAGCTACAAC 
CTGTTGCTGT TTTTCGCCCT GCGCGAACGC AACTTCCTGC TCTACGTACT GTTCGCCGCC 
AGCCTCGGCG GCGGCATGCT CGCCCAGTCG GGGCTCGGCG CCCAGTACCT GTGGAGCGAC 
GGCAGCGAGC TGGACAATCG CGCCCTGCCG TTCTTCCTGG CCCTCGCCCT GGCCCTGGGC 
ACCCTGTTCA CCCGCGAATT CCTCGATACC CGTCACGCCC TGCCGCGCTG GCACGAGTTG 
CTCGGCCAGG CCTGCGCCCT GCATTTCGGA GTGACCCTGG GCAGCCTGCT GCTACCGGTC 
GACCGGGCGC TGCAGACGCT CTCCGTGATC AGTATCGGCG GCATCCTGCT GTTGCTCGCC 
TGCGGCCTGG CCGGCCTGCT GCGGCGCTCG CCGGGCGCAC GCATCTTCGT GCTCGCCGAG 
CTGGCGCTGA TGGCTGGAGT AGTGCTCATG TCGCTGCGCA ACTTCACCCT GCTGCCGAGC 
AACCTGGTCA CCGCCAACAG CGTCCAGTTC GGCTCGGCGC TGGAGATGCT GCTGCTCTCC 
TTCGGCCTGG CGGCCCGCCT GGGCGAGCTC AAGCGCCTCA AGCTGGAGGC CCGCGAGGCC 
GTCCTGCGCA GCCAGCAGGA AGCCCTCAGG ACCCTGCAGG AGCAGGAGCG TCTGCTCGAA 
CGGCGGGTGG CCGAGCGCAC CGCAGCCCTC GCCGAGGCCA ACGCGCGCCT CAGCGCCATC 
GCCTTGCAGG ACCCGCTCAC CGGCCTGGCC AACCGCATCG GCCTGAACCA GCGCCTGACC 
CAGGCCTGGC AGCGCGCCCA GCGCAAGCAG GAACTGCTCG CGCTGATCCT GATCGATCTC 
GACGGTTTCA AGGCGATCAA CGACCGCTAC GGACATGCCG CCGGCGACCA GTTGCTGCTG 
CAGATCGCCG GACGCCTGCA GGCCAGCGCC CGCGCCACCG ACCTGGTGGC CCGGCTGGGC 
GGCGACGAAT TCGTGCTGAT CTGCGAGGCC ATCGGCTCCG AGGAGCAAGC CCACGCCCTG 
GCCGAGCGCA TCCTCCACTC GCTCGGCCAG CCGGTGCAGC TCGGCGATGC GCAGGTCAGC 
CTGAGCGCCA GCATCGGCAT CAGCATATGC CGCGGGCAGA GCCACGAAAA ACTGCTGTGC 
GAAGCCGACC AGGCGATGTA CCGGGCCAAG GCCGGCGGAC GCAGCCGCAT CCACCGGGCC 
GACAGCGACC CGCCGCCGCT CGACCCGGCC TACCGGCCGG GCTGA 

 

Protein sequence

MALSACGSQG TGERFPRWRI CVRLALLLGL LHGASPAIAG RQDEPAALRL DGSERSLDLH 
PHLQLLHDPG GRLQAEEVMA SGQAFAPAAG RHDLNFGYTR DIVWLRLDLE SRAKEVREWQ 
IEFLYPSLDR IELFGIGEAP LLGGDRVPAG QRDSPHLSPA FSVRLAPGER RSLFFRTQSS 
GTLTLDAQLW ESAAFARHSR LTLMLQSGYM AMLAALCSYN LLLFFALRER NFLLYVLFAA 
SLGGGMLAQS GLGAQYLWSD GSELDNRALP FFLALALALG TLFTREFLDT RHALPRWHEL 
LGQACALHFG VTLGSLLLPV DRALQTLSVI SIGGILLLLA CGLAGLLRRS PGARIFVLAE 
LALMAGVVLM SLRNFTLLPS NLVTANSVQF GSALEMLLLS FGLAARLGEL KRLKLEAREA 
VLRSQQEALR TLQEQERLLE RRVAERTAAL AEANARLSAI ALQDPLTGLA NRIGLNQRLT 
QAWQRAQRKQ ELLALILIDL DGFKAINDRY GHAAGDQLLL QIAGRLQASA RATDLVARLG 
GDEFVLICEA IGSEEQAHAL AERILHSLGQ PVQLGDAQVS LSASIGISIC RGQSHEKLLC 
EADQAMYRAK AGGRSRIHRA DSDPPPLDPA YRPG