| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avin_05480 |
|---|
| Symbol | |
|---|
| ID | 7759504 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Azotobacter vinelandii DJ |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012560 |
|---|
| Strand | - |
|---|
| Start bp | 528124 |
|---|
| End bp | 528789 |
|---|
| Gene Length | 666 bp |
|---|
| Protein Length | 221 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 643803468 |
|---|
| Product | HAD-superfamily hydrolase, subfamily IA, variant 3 |
|---|
| Protein accession | YP_002797776 |
|---|
| Protein GI | 226942703 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1011] Predicted hydrolase (HAD superfamily) |
|---|
| TIGRFAM ID | [TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.100764 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCCCCGC TATCCTGGAG CGAAATCGAC ACCGTCCTGC TCGACATGGA CGGCACCCTG
CTCGACCTGC ACTTCGACAA CCACTTCTGG CTGGAGCACC TGCCGCGACG CTACGCCGAG
CACCACGGCA TCGGCCGCGC CCTGGCCGAA CGCGAACTGC TGCCGCTGTT TCGCGAGCAT
GCCGGCCGGC TGACCTGGTA CTGCCTGGAC TTCTGGAGCG CCGAGCTGAA GCTGCCGGTC
GTCGAACTCA AGCGCGAGGT CGCCCACCTG ATCGCCCTGC GCCCGGAGGC CGACCGCCTC
CTCGCGGCCC TGCGCGGCGC CGGCAAGCGC GTCGCGCTGA TCACCAACGC GCACCGCGAT
TCGCTGTCGC TGAAACTGGA GCGAGTCGAG CTGGCGCCCT GGTTCGAGCG CCTGATCAGC
GCCCACGACT ACGGCTTCCC CAAGGAGGAC CAGCAATTCT GGTTCGCCCT GCAGCAGGAC
TTCGGCTTCG CGCCGGCGCG CACGCTGTTC ATCGACGACA GCCTGCCGGT GCTGCGCAGC
GCCCGGCGCT ACGGCATCGC CCACTTGCTG GCGGTACGCC GGCCGGACAG CCGCCAGGGT
CCGAAGGACA CCGAGGAATT CGCCGCCGTG GAGAGCTATG CGACCCTGTG CGAAGGATTG
TGCTGA
|
|---|
| Protein sequence | MPPLSWSEID TVLLDMDGTL LDLHFDNHFW LEHLPRRYAE HHGIGRALAE RELLPLFREH
AGRLTWYCLD FWSAELKLPV VELKREVAHL IALRPEADRL LAALRGAGKR VALITNAHRD
SLSLKLERVE LAPWFERLIS AHDYGFPKED QQFWFALQQD FGFAPARTLF IDDSLPVLRS
ARRYGIAHLL AVRRPDSRQG PKDTEEFAAV ESYATLCEGL C
|
|---|
| |