| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avin_04700 |
|---|
| Symbol | secB |
|---|
| ID | 7759427 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Azotobacter vinelandii DJ |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012560 |
|---|
| Strand | + |
|---|
| Start bp | 443520 |
|---|
| End bp | 444011 |
|---|
| Gene Length | 492 bp |
|---|
| Protein Length | 163 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 643803391 |
|---|
| Product | preprotein translocase subunit SecB |
|---|
| Protein accession | YP_002797699 |
|---|
| Protein GI | 226942626 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1952] Preprotein translocase subunit SecB |
|---|
| TIGRFAM ID | [TIGR00809] protein-export chaperone SecB |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.800736 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACTGAAC AAGCTAGCAA CGGCGCCGCA CAAGACGGCC AGAACGCCCA ATTCTCCCTG
CAGCGCATCT ATGTGCGCGA CCTTTCCTTC GAGGCACCGA AGGCGCCGGA GATCTTCCGC
CAGGACTGGA AGCCGAGTGT CCAACTGGAC CTGAACACCA GGCAGAAAGC GCTCGACGGC
GGCGACTTCT ACGAAGTGGT GCTGAGCCTT TCGGTCACCG TGAAGACCGG CGAGGAAGTG
GCCTTCATCG CCGAGGTGCA GCAGGCCGGC ATCTTCCTGA TCAAGGGCCT GGACGCCGAA
GCCATGGGTC ACACCCTGGG CGCCTTCTGC CCGAGTCTGC TCTTCCCCTA TGCCCGCGAG
GCGCTGGACA ATCTGGTCGT GCGTGGCTCC TTCCCGGCCC TGATGCTGGC GCCGGTGAAT
TTCGACGTGC TCTACGCCCA GGAACTGGCG CGGATGCAGG CCGAGGGCCA GGCATCGGGT
ACGGTGCAGT AA
|
|---|
| Protein sequence | MTEQASNGAA QDGQNAQFSL QRIYVRDLSF EAPKAPEIFR QDWKPSVQLD LNTRQKALDG
GDFYEVVLSL SVTVKTGEEV AFIAEVQQAG IFLIKGLDAE AMGHTLGAFC PSLLFPYARE
ALDNLVVRGS FPALMLAPVN FDVLYAQELA RMQAEGQASG TVQ
|
|---|
| |