| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avin_03980 |
|---|
| Symbol | |
|---|
| ID | 7759357 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Azotobacter vinelandii DJ |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012560 |
|---|
| Strand | - |
|---|
| Start bp | 378305 |
|---|
| End bp | 379198 |
|---|
| Gene Length | 894 bp |
|---|
| Protein Length | 297 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 643803320 |
|---|
| Product | HlyD family secretion protein |
|---|
| Protein accession | YP_002797631 |
|---|
| Protein GI | 226942558 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1566] Multidrug resistance efflux pump |
|---|
| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.79966 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCCTGGA AAAGAGTCAT CAGTGTCGTC TTCACCCTGC TGGTCGCCGC CGTCGCCGCC
TACATCGTGC GCACGCTGTG GGTGCACTAC ATGGATTCGC CCTGGACCCG CGACGGCCGG
GTGCGCGCCG ACGTGATCAA CATCGCTCCC GACGTCGCCG GCCTGGTGGT CGAGGTGGCG
GTGAAGGACA ACCAGCAGGT CAAGAAGGGC GACCTGCTGC TGCGCATCGA CGACGAACAC
TACCGCCTGG CGGTCAAGCA GGCCGAAGCC CTGGTGGCCT CCCGCAAGGC CCAGTTGCAG
ATGAATCAGG AAAACGCCCA GCGGCGCAGC GACCTGGACG CCATGGTGGT GTCGCGCGAA
AGCCGCATCA ACGCCAGCCA CATGGCCAGC GCCGCCCAGG CCGAATACCA GGAAGCACTG
GCGCAGCTCG ACCGGACCAA GCTCGACCTG AAGCGCACCG AAGTGCACGC GCCGGTGGAC
GGCTACGTCA CCAACCTCAA CGTCTTCGAG GGCGACTTCG CCAACCGTGG CGAGGCGGCC
ATGGCCCTGG TCGACAGCCA TTCCTTCTAC GTCTACGGCT ACTTCGAGGA AACCCGCCTG
CCGCTGATCC GCGTCGGCGA CAAGGCCGAA CTGCGACTGA TGAGCGGCGA GCGCCTGAGC
GGCCAGGTCG ACAGCATCGC CCGCGGCATC TACGACCGCG ACAACCCGGA AAGCCGCGAA
CTGGTCGCCG ACGTCAACCC GACCTTCAAC TGGGTGCGCC TGGCCCGGCG GATACCGGTA
CGCATCCGCA TCGAAGAGGT GCCGGAAGGC GTGACCCTGG CGGCCGGCCT GACCTGCACG
GTGATCGTCA CCCCTCCCGC CGACCGGCCG CGCCCGGTGC CGGATCGCTG GTAG
|
|---|
| Protein sequence | MSWKRVISVV FTLLVAAVAA YIVRTLWVHY MDSPWTRDGR VRADVINIAP DVAGLVVEVA
VKDNQQVKKG DLLLRIDDEH YRLAVKQAEA LVASRKAQLQ MNQENAQRRS DLDAMVVSRE
SRINASHMAS AAQAEYQEAL AQLDRTKLDL KRTEVHAPVD GYVTNLNVFE GDFANRGEAA
MALVDSHSFY VYGYFEETRL PLIRVGDKAE LRLMSGERLS GQVDSIARGI YDRDNPESRE
LVADVNPTFN WVRLARRIPV RIRIEEVPEG VTLAAGLTCT VIVTPPADRP RPVPDRW
|
|---|
| |