Gene Avin_00200 details

Gene Information

• Locus tag: Avin_00200
• Symbol: yrdC
• ID: 7758988
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Azotobacter vinelandii DJ
• Kingdom: Bacteria
• Replicon accession: NC_012560
• Strand: +
• Start bp: 22722
• End bp: 23279
• Gene Length: 558 bp
• Protein Length: 185 aa
• Translation table: 11
• GC content: 76%
• IMG OID: 643802947
• Product: RNA binding yrdC protein
• Protein accession: YP_002797263
• Protein GI: 226942190
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0009] Putative translation factor (SUA5)
• TIGRFAM ID: [TIGR00057] Sua5/YciO/YrdC/YwlC family protein

Plasmid Coverage information

• Num covering plasmid clones: 9
• Plasmid unclonability p-value: 0.0077597
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCTGGGCG ATTGGCGGGT GCGACAGGTG GCGCGGGCGG TGCGCCGGGG CGGGGTGATC 
GCTTATCCGA CCGAGGCGGT CTGGGGCCTG GGCTGCGATC CGTGGAACGC GGATGCGGTG 
CGCCGCCTGC TGGCGCTCAA GCGGCGGCCG CAGGACAAGG GCCTGATCCT GGTCGCCGCC 
GACATTGGCC AGTTCGGCTT CCTGCTCGAC GACCTGCCGT CGGCCTGGCG CGAGCGGCTG 
GCCGGGACCT GGCCGGGGCC GAACACCTGG CTGGTGCCGC ACCGGGGCCG CCTGCCGGCA 
TGGATCACCG GCCGCCACGC GAGCGTCGCC CTGCGCGTCA GCGACCATCC GCTGGTGCGT 
GCGCTGTGCC GTCTCACCGG CCCGCTGGTG TCCACCTCGG CCAATCCCGC CGGCCGCCCC 
GCCGCACGCT CGCGGCTGCG CGTCGAACAG TACTTCCCGC GCCGCCTGGA CGCCGTGCTC 
GGCGGCGCCC TGGGCGGGCG GCGCAACCCG AGCCTGATCC GCGACCTGGC CAGCGGCCAG 
GTGATCCGCC CGGCCTAG 

 

Protein sequence

MLGDWRVRQV ARAVRRGGVI AYPTEAVWGL GCDPWNADAV RRLLALKRRP QDKGLILVAA 
DIGQFGFLLD DLPSAWRERL AGTWPGPNTW LVPHRGRLPA WITGRHASVA LRVSDHPLVR 
ALCRLTGPLV STSANPAGRP AARSRLRVEQ YFPRRLDAVL GGALGGRRNP SLIRDLASGQ 
VIRPA