Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cla_1376 |
Symbol | cdtA |
ID | 7409882 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Campylobacter lari RM2100 |
Kingdom | Bacteria |
Replicon accession | NC_012039 |
Strand | - |
Start bp | 1326145 |
End bp | 1326957 |
Gene Length | 813 bp |
Protein Length | 270 aa |
Translation table | 11 |
GC content | 31% |
IMG OID | 643718498 |
Product | cytolethal distending toxin, subunit CdtA |
Protein accession | YP_002575943 |
Protein GI | 222824369 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 59 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCAAAAAA TTAAATTTAT AATGATGTTA AGTGCATTGA TGATATTGTT TATTGGATGT TCTTCTAAAG AACAAATTAA TCCTTTAGGA CGCTCTTTAG GTAAGATGAA TGATAATGAT CCTTTGAAAA TAGGTAAAAA TCCAACTCCA CCTGCTAAGC AAAAAATACC AGCTTTAGTA GAAGGTAAGC ATTTTCCTGC TATACCACTT GTACCACCAA TAATTACTAC AAATACTTTT AAAGGGGATA ATTCTATCAA AGGACCGCTT CCAAGACTTA CTTCAAATAA CGAGCTTGCT CAAAATACTT TATATGAAAA CATAGGATTT GTAAGTGATT TTGTGACTAT TATGAATCCA AATGGAGCCG CATTAACAGT TTGGGCCTTA AATCCAGGTA ATTGGATATG GGGTTATAGT TTATTTAATA GTAAGACTTT TGGTGATGCG AGGGTCTGGC AGCTGATTGA ATTTCCAAAT AATACTGTGA TGATTAAAAA TGCAAAAACT TTAACTTGTT TAACAGCTTA TGGAAATGGT ATAGTTCATT ATCCTTGCGA TCAAAGTAAT CATGCGCAAT TTTGGAGATT TTTTCCTATG AGTAATGGTG CTTATCAAAT TCAAAATTAT GCCACTCAAC AATGTATACA AACAACAGTT TCAAATGTGA TGGAAGAATT TAATTTTAAT TATTACAGTA TCTTTTTAAC TTCATGTTTA AAACCAAGAG AAAAAAATTT AGATAGACAA TGGAGTGTTA GTGCACCAGC TTTTCAAACA ATATCACCTT ATGCTTATAC AGGAGAGCAA TGA
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Protein sequence | MQKIKFIMML SALMILFIGC SSKEQINPLG RSLGKMNDND PLKIGKNPTP PAKQKIPALV EGKHFPAIPL VPPIITTNTF KGDNSIKGPL PRLTSNNELA QNTLYENIGF VSDFVTIMNP NGAALTVWAL NPGNWIWGYS LFNSKTFGDA RVWQLIEFPN NTVMIKNAKT LTCLTAYGNG IVHYPCDQSN HAQFWRFFPM SNGAYQIQNY ATQQCIQTTV SNVMEEFNFN YYSIFLTSCL KPREKNLDRQ WSVSAPAFQT ISPYAYTGEQ
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