| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cla_1234 |
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| Symbol | ptmD |
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| ID | 7410967 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Campylobacter lari RM2100 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012039 |
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| Strand | - |
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| Start bp | 1187612 |
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| End bp | 1188784 |
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| Gene Length | 1173 bp |
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| Protein Length | 390 aa |
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| Translation table | 11 |
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| GC content | 26% |
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| IMG OID | 643718360 |
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| Product | flagellin modification protein PtmD, putative UDP-N-acetylglucosamine 2-epimerase |
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| Protein accession | YP_002575806 |
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| Protein GI | 222824232 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0381] UDP-N-acetylglucosamine 2-epimerase |
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| TIGRFAM ID | [TIGR00236] UDP-N-acetylglucosamine 2-epimerase
[TIGR03568] UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.0000000498244 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGTAAAA AAATTTGTGT AATAAGTGGC ACTAGAGCTG AGTGGTATTT GTTGCAAAAT
TTATGTAAAA AAATAAAAAA TGACAAAGAT TTAACGCTTC AACTCATCGT TACAGCGGCT
CATTTAAGTC AAGATTTTGG TTTTACTTAC CAAGAAATTG AAAAAGAATT TAAAATAGAT
AAAAAAATTT CTATGCTTTT GAGCAATGAT GATAATATAG CACTTTGTAA AAGTATGGGG
CTTTTACAAA TTTCACTTTG TGAAGCTTTA GATGAGTTAA AACCTGATAT AGTAGTAATC
TTAGGTGATA GATATGAGAT GTTAGCAGTA GCAAGTACTT GTTTGATGAT GCAAATTCCA
ATAGCGCATT TACATGGCGG AGAATCAACA TTTGGATTAG TTGATGAAGC GATAAGGCAT
GCTATTACCA AAATGTCACA TTTGCATTTT ACAAGCACAC AAGAATATGC AAATAGGGTT
ATTCAGCTTG GAGAAAACAA GGATAAAGTT TATAATGTTG GTGCTTTTGG AATTGATAAC
ATAAAATCTA TGAAATTATT AAAAAAACAA GAACTAGAAA ATATTATAAA TTTTTCCTTC
AAAAAAAATA CTTTTTTGGT TACATTTCAT CCTGTTACTT TGGAAAAAAA TAGCGCTAAA
ATACAATTTA AAGAAATACT AGATGCCTTG AAATGTATAT TAAAAAACGA TGATTTTGCA
GTTATTTTTA CTAGGCCAAA TGCTGATTTA GATTGTAAAA TTATAAATTC TATGATAAAT
GATTTTGTTT TAAAATATAA AAATAGCATT GTTTTTGATA ATTTAGGTTC ATTGAATTAT
TTAAGTGTTT TGCAATTTGT AAAAGCTGTT ATTGGAAATA GTTCAAGTGG TATTGTAGAA
GCACCAAGTT TTAAAGTTGC AACAATTAAT ATTGGAGATA GACAAAAAGG AAGAATAAGA
ACTAAATCCA TTATAGATGT AGCTCCTAAA AAAAATGAAA TTTTAAATGC AATTAAAATA
GTATTATCAA AAAAATTTCA AAATGAATTG CAATCTGTAA AAAGTCCATA TGGTAATGGA
AAAGCATCTT GCAAAACTAA AGAAATTTTA AAAAATATAA ATTTAAAAAA TATTTTAATA
AAAGAATTTA ATGATATAAA AGTTGGCGTA TGA
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| Protein sequence | MSKKICVISG TRAEWYLLQN LCKKIKNDKD LTLQLIVTAA HLSQDFGFTY QEIEKEFKID
KKISMLLSND DNIALCKSMG LLQISLCEAL DELKPDIVVI LGDRYEMLAV ASTCLMMQIP
IAHLHGGEST FGLVDEAIRH AITKMSHLHF TSTQEYANRV IQLGENKDKV YNVGAFGIDN
IKSMKLLKKQ ELENIINFSF KKNTFLVTFH PVTLEKNSAK IQFKEILDAL KCILKNDDFA
VIFTRPNADL DCKIINSMIN DFVLKYKNSI VFDNLGSLNY LSVLQFVKAV IGNSSSGIVE
APSFKVATIN IGDRQKGRIR TKSIIDVAPK KNEILNAIKI VLSKKFQNEL QSVKSPYGNG
KASCKTKEIL KNINLKNILI KEFNDIKVGV
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