| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cla_1074 |
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| Symbol | pbpA |
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| ID | 7410808 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Campylobacter lari RM2100 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012039 |
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| Strand | + |
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| Start bp | 1029281 |
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| End bp | 1031215 |
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| Gene Length | 1935 bp |
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| Protein Length | 644 aa |
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| Translation table | 11 |
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| GC content | 33% |
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| IMG OID | 643718200 |
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| Product | penicillin-binding protein 1A |
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| Protein accession | YP_002575647 |
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| Protein GI | 222824073 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0744] Membrane carboxypeptidase (penicillin-binding protein) |
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| TIGRFAM ID | [TIGR02074] penicillin-binding protein, 1A family |
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Plasmid Coverage information |
| Num covering plasmid clones | 39 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATAAAAA TTTTAAAAAT ATTTCTTTCT TTTTGTGTAG TATGTGCGGT TGGAATTTTT
ATATTTATTG CATATTTGTT TTCAGATTCT GATTTAAATC AATACACCTT TAAAGATTAC
AAACCACCTC TTACAACACA AATTTTTGAT AAAAATGGAA AATTAGTTGC AAATGTTTTC
GAGCAACACC GCTTTTACGC TCCTTATGAA GAGTTGCCTC CAAGACTTAT AGAAGCTTTA
GTGGCCATTG AAGATACTAG CTTTTTTGAA CATGGTGGGG TTAATATAGA TGCGATTTTT
AGAGCAGCTA TTAAAATCAT AAGAAGTGGT GGAAAAACCA TGGAAGGAGC TTCCACTCTT
ACGCAACAAT TCATAAAAAA CACAGAATTA ACCCCAGAGC GTACTTTGAG TAGAAAGCTA
AAAGAAGCTT TACTTGCATA TAAAATAGAA AATACTTTAA CTAAAGAGCA AATTTTAGAA
AGATATTTAA ATTTCATCTT CTTTGGACAT GGATATTATG GAGTAAAAAC TGCTGCGCTT
GGGTATTTTA GAAAAAATTT AGATGATCTT AGCTTGAAAG AAATTGCCAT TTTGGTAGGT
ATGCCAAAGG CTCCAAGCAC TTATGATCCT ACTAGACATT TAGATCTTTC TTTAGCTAGA
GCAAACAGCG TAGTACAAAG AATGTATAAT CTTGGTTGGA TTTCTAAAGA AGAGTATGAA
AATGCTTTAA AAGAAATTCC AAAAGTATAT GATGATACTT TAACACAAAA TGCAGCCCCT
TATGTTACTC AAGAAGTTTT AAAACAACTA AGTGGTATAA AAGATCTTAA AAGTGGTGGT
TATAAAATAG AGCTTGCTAT CGATCTTGAT GTGCAAAATA TTGCAAGAGA GGCTTTAAAA
TTTGGCTATG ACGAGATAAT AAAAAGAGAC AAAGATGCAA ATTTAAGTAC ACTTAATGGA
GCTATGATAG TAGCAAATCA CCAAAATGGA GATATATTAG CCTTAGTAGG TGGGGTAAAT
TACACAAAAA GTAATTTCAA CCGCGCCACT CAAAGCTTAA GACAGCCTGG AAGTTCTTTT
AAGCCTTTTT TATACCAAAT TGCCATTGAC ATGGGTTATT CTCCTATGAG TAAAGTTGCT
GATATTTCAA GAATTTTTGA AAGCACCAAA GAAGATGAGA AAGATTGGAA ACCTAAAAAT
TATGGGGGAA AATTTCTAGG GCTTATAAGT TTAAAAGAAG CACTAACTGG ATCAAGGAAC
CTAGCTACCA TAAATTTAGC TCTTGCCTTA GGGCTTGATG TAATCCATGA TAAACTTCAA
TTTATGGGCT TTGAGAATAT ACCGGTTGAT TTATCTATAG TTTTGGGTAG CTTTGGGATT
TCTATTTATG ATTATGCTAA ACTTTATACA GTATTTGGAA ATTATGGCGT GCAAAAAGAT
TTAATACTCA TTAAAAGAGT AATCGATAAA AATGGCAAAA TAATAGTAGA GTTTAACTCC
GGAGAAAGAA AAATCAGCGA ACCCGAACAA GCCTTTTTAG TTAATGATAT GATGCAAAAT
GTTGTTAAAA AAGGTACTGG ACGCAATGCT AGGGTAGAAG GGATTGAGAT AGCTGGAAAA
ACAGGTACTT CAAATAAAAG CGTAGATGCT TGGTTTTGTG GCTTAACTCC AGAAATAGAA
GCTATTATTT GGTATGGAAA TGATGATAAT AAACCTATGA AACAAATCGA AGGTGGTGCA
AGGACTGCTG CTCCGGTTTT TAAAGAATTT TTAACAAAAT ACCTAGAACT TTATCCTGAT
AGCGCTAGAA AATTTATCAT CCCAAAAGGA GTTTATCAAG GAATTTATGA AAAACAAAGA
GAGTATTACA CCAATACTTC TCCATTTCCA AAAAACAACC CTGCTCTATC TGAAAACAAT
GAGATAATTT TTTAA
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| Protein sequence | MIKILKIFLS FCVVCAVGIF IFIAYLFSDS DLNQYTFKDY KPPLTTQIFD KNGKLVANVF
EQHRFYAPYE ELPPRLIEAL VAIEDTSFFE HGGVNIDAIF RAAIKIIRSG GKTMEGASTL
TQQFIKNTEL TPERTLSRKL KEALLAYKIE NTLTKEQILE RYLNFIFFGH GYYGVKTAAL
GYFRKNLDDL SLKEIAILVG MPKAPSTYDP TRHLDLSLAR ANSVVQRMYN LGWISKEEYE
NALKEIPKVY DDTLTQNAAP YVTQEVLKQL SGIKDLKSGG YKIELAIDLD VQNIAREALK
FGYDEIIKRD KDANLSTLNG AMIVANHQNG DILALVGGVN YTKSNFNRAT QSLRQPGSSF
KPFLYQIAID MGYSPMSKVA DISRIFESTK EDEKDWKPKN YGGKFLGLIS LKEALTGSRN
LATINLALAL GLDVIHDKLQ FMGFENIPVD LSIVLGSFGI SIYDYAKLYT VFGNYGVQKD
LILIKRVIDK NGKIIVEFNS GERKISEPEQ AFLVNDMMQN VVKKGTGRNA RVEGIEIAGK
TGTSNKSVDA WFCGLTPEIE AIIWYGNDDN KPMKQIEGGA RTAAPVFKEF LTKYLELYPD
SARKFIIPKG VYQGIYEKQR EYYTNTSPFP KNNPALSENN EIIF
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