| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cla_1039 |
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| Symbol | mfd |
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| ID | 7410773 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Campylobacter lari RM2100 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012039 |
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| Strand | - |
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| Start bp | 992437 |
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| End bp | 995376 |
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| Gene Length | 2940 bp |
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| Protein Length | 979 aa |
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| Translation table | 11 |
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| GC content | 28% |
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| IMG OID | 643718165 |
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| Product | transcription-repair coupling factor |
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| Protein accession | YP_002575612 |
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| Protein GI | 222824038 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
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| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 0.113966 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCAAGCTA AATTATATGA ATATTTATTA AGTAACAAAG CTGAGTTAAT AGTTTGTGAG
AATGATAAAG AAGCAGATGA ATTAGCCCAG GTTTGTCTGT TTTTAAATTT AAAAACTTTC
GTTTTGCCTG ATTTTAGAGC AGAATTTGGC AGTGACTTGC GCTCTTTTTC TAAAGAGCTT
TTTGAAATTT GTAAAGTTTT AAATGCTTAT CATAAAGAAG ATGAAAATAA AATTTTAATT
TCTCCTATAA AAACAATTTT GCAAAAACTC CCTGGAAAAA AGCATCTAAA AAATATTATT
CTTAAAAGAA ATTCACTTCT TGCTTTAGAG AAATTTAAAG AAGAAATTTT ACATAGTGGG
TATGAATTTG TTGATATAGT TCAAGATAAG GGTGAGATTT CAATACGCGG GGATATTATA
GATATTTTTG CAATTAATGA AGAGCAACCT TTTAGAATTT TGCTTTTTTC AGATGAGATA
GAAAGCATAA GATATTTTGA TATTCATACA CAAAAATCAA TCCCAAATGA ACTTTCAAAA
ATTGAGATTT GTCCATTTTT AAATGCTTTT AATCAAGAAG AATATGAAAA TCTACAAGAA
AAAATTCAAA ATTTTCAAAG TCAAAGCATT ATCAATGATG TTAATTCTTT AGGTTTTTGG
TGTATTGATG ATTTTTGTGA TTATTCAGAT TTAAATTTCG TAAGCATAAA AAAATTTGAT
ATAAATGATT TTGAAGAAGA TATTAGCAAA ATTAATCAAA ATATTTTACC TGAACCAAGA
TTTTATAAAG ATTTAGTAAG TTCTTACAAT CATGATTTTT TCACTTTTCA TAAAGATAAA
AAAATTACTA TTTTGATAAA AAATGAAGCT TTGTTTAAAG CTTTAAATTT ACAAGAATTT
TCAAATATTA AATTAAAAAT ATCTCAAGAA AGAATCAATC TAATCGCTCA AGATGAGCTT
GTTATTTCTT TAAATAAAAA AGAAAAAAGT AAAAGAATTA GAAAGGCAAG TTTGGTAATA
GATGAGCTTA GAGTCGGGGA TTTTGTTGTA CATGAAGATT ATGGTATAGC TAAATTTTTA
GGTCTTGAGA TTATTATAAT TGCAGGAGCA AAAAAAGAAT TTGTAGCTCT TGGGTATTTA
AATAATGATA AGCTTTTATT GCCTGTTGAA AATTTGTATA TGATTGATAA ATATATCGGC
GCAAGTGGTG GTGTGCCTTT GCTTGATAAG CTTGGAAAAG GAAGTTTTCT AAAAATCAAA
GAAAGATTAA AAGAAAAATT ATTTGCCATT GCTTCAAATA TAGTTTCTTT AGCAGCAGCT
AGAGCTTTGA TAAAAGCAAA AGAATTAAAA ATTTCTCAAG AATTACAAGA TGAATTTATC
AATAAGGCGG GATTTTTTTA CACTAAAGAT CAAAGTCAAG TTTGTCAAGA AATCACTCAA
GATTTAAAAA GTTCTCAAGT AATGGATAGG CTTTTAAGTG GTGATGTGGG CTTTGGTAAA
ACTGAAATTG CAATGAATGC TATATTTACT TGTGTAAAAA GTGGCTATAC GGCTTTGTTT
TTTGTGCCAA CTACTTTACT TTCAGCCCAG CATTTTAAAA CCTTAAAAAA AAGATTTGAT
CCATTTAATA TAGAAGTTTT TAAGCTCGAT CGCTTTACTA GTGCCAAAGA AAAAAAACAA
ATTTTGGCAT TTTTAAAAGA AAATAAGCCT TGTGTAGTGG TTGGAACGCA TTCTCTTTTA
GGGGTTGAGT GTGAAAATTT AGGTTTAGTT GTGATAGATG AGGAGCATAA ATTTGGTGTA
AAACAAAAAG AAAAACTCAA AGAATTAAGT AAAAACTCCC ATATTTTATC TATGTCAGCA
ACGCCTATAC CAAGAAGCTT AAATCAAGCC CTTAGTTCTT TAAAATCATA CAGCATCTTA
CAAACTCCAC CTGAGGATCG TTTAGATGTA AGAACTTTTG TAAGAGAAAG TAATGATGCT
TTGATTAAAG AAGCTATTTC TAGAGAATTA AGAAGAGCAG GACAAATTTT TTATATACAC
AATCATATAG CAAGTATTGA TGGGTGTAAA AAATACCTTT TAGATTTATT TCCGAATTTA
AAAATTTTGA TTTTACATTC AAAAATTGAT GCAAAAACTA CAGAAGAGCA AATGCTGAAA
TTTGAAAATA AAGAATATGA TTTGTTACTT TGTACTTCTA TAGTTGAAAG TGGTATTGAT
CTTGCAAATG CAAATACTAT CATAGTAGAA AATTCAGATC GTTTTGGTAT GGCTGATTTA
CATCAACTTA GAGGACGAGT GGGGCGTAGC TTTCAGCAAG GATATTGTTA TTTTTTAATT
GAAGATAAAG AAAAAATCAC AAAAGATTCT CTAAAAAGAC TTACAAGTTT AGAAAGCAAT
TCTTATTTGG GTTCAGGAAG CGTGCTTGCT TATCATGATT TAGAAATTCG TGGGGGTGGA
AATTTATTAG GTGTGGATCA AAGTGGGCAT ATAGAGCAAA TTGGCTATAG CTTGTATCTT
AAAATGCTTG AAGATGAGAT TAATAAATTA AGCAAAAAAG AAGAAATTAA AGAGAAAAAA
ATAGATTTAA AATTAAATAT TAATGCTTTT TTAAATAGTG AATATATTAG CGAGGATCGC
TTGAGGTTAG AGCTTTATAG AAGACTTAGT AAATGCATGA GCGTAAATGA AGTATATGAA
ATAGAAAGTG AGATGAATGA TCGCTTTGGC AAGCCTGATA TTTTCACTAA GCAATTTTTA
GACCTAATTA TCATAAAAAT TTTAGCTAGC AAGCATTATA AACTAGTGAG CAATTATGAG
CAAAATATTT GTTTTGTAAA AGATGATGAT AGTAAAGAAG TTATAAAAGC AAAAAGTAAA
GATGATGATG ATGTGATTGA GGCTGTGTTG ATGCATTTAA GAAAGAGTGA AAAAGTATGA
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| Protein sequence | MQAKLYEYLL SNKAELIVCE NDKEADELAQ VCLFLNLKTF VLPDFRAEFG SDLRSFSKEL
FEICKVLNAY HKEDENKILI SPIKTILQKL PGKKHLKNII LKRNSLLALE KFKEEILHSG
YEFVDIVQDK GEISIRGDII DIFAINEEQP FRILLFSDEI ESIRYFDIHT QKSIPNELSK
IEICPFLNAF NQEEYENLQE KIQNFQSQSI INDVNSLGFW CIDDFCDYSD LNFVSIKKFD
INDFEEDISK INQNILPEPR FYKDLVSSYN HDFFTFHKDK KITILIKNEA LFKALNLQEF
SNIKLKISQE RINLIAQDEL VISLNKKEKS KRIRKASLVI DELRVGDFVV HEDYGIAKFL
GLEIIIIAGA KKEFVALGYL NNDKLLLPVE NLYMIDKYIG ASGGVPLLDK LGKGSFLKIK
ERLKEKLFAI ASNIVSLAAA RALIKAKELK ISQELQDEFI NKAGFFYTKD QSQVCQEITQ
DLKSSQVMDR LLSGDVGFGK TEIAMNAIFT CVKSGYTALF FVPTTLLSAQ HFKTLKKRFD
PFNIEVFKLD RFTSAKEKKQ ILAFLKENKP CVVVGTHSLL GVECENLGLV VIDEEHKFGV
KQKEKLKELS KNSHILSMSA TPIPRSLNQA LSSLKSYSIL QTPPEDRLDV RTFVRESNDA
LIKEAISREL RRAGQIFYIH NHIASIDGCK KYLLDLFPNL KILILHSKID AKTTEEQMLK
FENKEYDLLL CTSIVESGID LANANTIIVE NSDRFGMADL HQLRGRVGRS FQQGYCYFLI
EDKEKITKDS LKRLTSLESN SYLGSGSVLA YHDLEIRGGG NLLGVDQSGH IEQIGYSLYL
KMLEDEINKL SKKEEIKEKK IDLKLNINAF LNSEYISEDR LRLELYRRLS KCMSVNEVYE
IESEMNDRFG KPDIFTKQFL DLIIIKILAS KHYKLVSNYE QNICFVKDDD SKEVIKAKSK
DDDDVIEAVL MHLRKSEKV
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