Gene Cla_0930 details

Gene Information

• Locus tag: Cla_0930
• Symbol: pdxA
• ID: 7410510
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Campylobacter lari RM2100
• Kingdom: Bacteria
• Replicon accession: NC_012039
• Strand: -
• Start bp: 892154
• End bp: 893254
• Gene Length: 1101 bp
• Protein Length: 366 aa
• Translation table: 11
• GC content: 29%
• IMG OID: 643718058
• Product: 4-hydroxythreonine-4-phosphate dehydrogenase
• Protein accession: YP_002575505
• Protein GI: 222823931
• COG category: [H] Coenzyme transport and metabolism
• COG ID: [COG1995] Pyridoxal phosphate biosynthesis protein
• TIGRFAM ID: [TIGR00557] 4-hydroxythreonine-4-phosphate dehydrogenase

Plasmid Coverage information

• Num covering plasmid clones: 40
• Plasmid unclonability p-value: 0.73829
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAAAAAA TTGCTATTAG TATAGGGGAT TTAAATGGCA TAGGTGTGCA AATTTTATTA 
GCCTCTCATG ATGAGTTAGT AAAAATTTGC GAGCCTTATT ATTTTGTGCA TTATAAATTA 
TTTCAAAAAG CAAGCAAGCT TTTAAAATTA AATACAAAAT CTAAGATAAA TTTAGTTGAA 
ATTTCTTATG CAAACGAGCC AAAATTTATT TTCAAAGAAG AAAAAGATAA TTTTTTAATT 
TATGATTTTT CATATCAAAC TAGCAAGGAA ATTGATTATG ATTTTGAGTT AAATCCTGCA 
AATTTAGATG CTAAAAGCGG GGCTTATTCT TTTTTGAGTT TTGAGGGGGC TAGTTATTGT 
ACGCATTTAT TTTTAGATGC TTTAGTTACT TTGCCTATAA ATAAAAAAAC TTGGCAAATG 
GCAGGAGTGA GCTATAAAGG TCACACAGAA GCACTAAGGG AATTTTTCAA GCAAGATGCT 
ATCATGATGT TAGGTTGTGA TGAGCTTTTT GTGGCTTTAT ACACTGAACA CATTCCATTA 
AAAGATGTTT ATAAGCAAAT TAAAGCTTTG AGGTTGGCTA AATTTTTGAT TGATTTTTAT 
CAATGTACTT TATTTGAAAA AATTGGAGTT TTAGCTTTTA ATCCTCATGC AAGCGATAAT 
GGCGTAATAG GTGGAGAAGA AGAAAATGAA ATAAAAAAGG CCATAAAAAT GGCAAATGTA 
TTTTTAAAAG ATAGCACGTT GAATTTGCAA AATTTAGAAA ATGAAGATTT TTTAAATCAA 
AAAGAAAAAG AACTCTCTTA TAAAGAAAAT ATCTTTTTAA GCGAGCCTTT GGTGGCTGAT 
AGTGCTTTTA CTCCTTTTGC ACTTAGTAAA TGCAAGTATT TAGTAAGCAT GTATCATGAT 
GTAGGCTTAG CACCTTTAAA GGCTTTATAT TTTGAAAAAA GTATCAATGT GAGTTTAAAT 
TTACCCATAA TTCGCACTAG CGTTGATCAT GGCACAGCTT ATGATAAGGC TTATAAAAAT 
GAAAAAATAA ATTTACAAAG TTATATGCAG GCGGTGAAAT CTGCTTTGCA ATTTTTAAAG 
ATCAAAGAAA AAACTAAGTA A 

 

Protein sequence

MKKIAISIGD LNGIGVQILL ASHDELVKIC EPYYFVHYKL FQKASKLLKL NTKSKINLVE 
ISYANEPKFI FKEEKDNFLI YDFSYQTSKE IDYDFELNPA NLDAKSGAYS FLSFEGASYC 
THLFLDALVT LPINKKTWQM AGVSYKGHTE ALREFFKQDA IMMLGCDELF VALYTEHIPL 
KDVYKQIKAL RLAKFLIDFY QCTLFEKIGV LAFNPHASDN GVIGGEEENE IKKAIKMANV 
FLKDSTLNLQ NLENEDFLNQ KEKELSYKEN IFLSEPLVAD SAFTPFALSK CKYLVSMYHD 
VGLAPLKALY FEKSINVSLN LPIIRTSVDH GTAYDKAYKN EKINLQSYMQ AVKSALQFLK 
IKEKTK