Gene Cla_0620 details

Gene Information

• Locus tag: Cla_0620
• Symbol: amiA
• ID: 7410686
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Campylobacter lari RM2100
• Kingdom: Bacteria
• Replicon accession: NC_012039
• Strand: +
• Start bp: 590666
• End bp: 592606
• Gene Length: 1941 bp
• Protein Length: 646 aa
• Translation table: 11
• GC content: 26%
• IMG OID: 643717751
• Product: N-acetylmuramoyl-L-alanine amidase
• Protein accession: YP_002575200
• Protein GI: 222823626
• COG category: [M] Cell wall/membrane/envelope biogenesis
• COG ID: [COG0860] N-acetylmuramoyl-L-alanine amidase

Plasmid Coverage information

• Num covering plasmid clones: 43
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCTTAGAA TATTTTTTAT TTTTTTATTA TTTTGTTTTA GTGTTTTTGC TAATGCAGAA 
GTTAAGAAAT TTGATCAAAA TTTTTTAACT TCTAATTCAG AAGAAAAACT ACAATTACAC 
CAGCAATTAA AATCTTTGTA TATACAAAGT GTGATTAATG ATAATAACGA AGAAAAAAAT 
GAGATTTTAA AAAGATTGAT TATTAGCTCT AATTCTTTAG GTTTTGATGA TAAAGCTTAT 
GTGCAAGAGC TTAAAGAAAG CGGGGTAAGT GAAGAAGAAA TTTCGCGTTT AAAAAATGCT 
TTAAAAGTTA TACAAGATCA AAAAGTAAAA AAAGAACAAA CAAAAATTGA AACCAATACT 
ACATTACCTA TTAATAAAAA AGAAGATAAA AAAGAAGATA AAAAAGAAGA TAAAAAAGAA 
GATAAAAAAG AAGATAAAAA AGAAGATAAA AAAGAAGATA AAAAAGAAGA TAAAAAAGAA 
GATAAAAAAG AAGATAAAAA AGTTCTGGCG CAAAAGGAGC TTTTTGTACT TGATGTAAAG 
AAATTAGACA ATGGTATCTT GCTTGATTTA AGTGAAAAAA TTAGCCAAAA AGATATAAAA 
AATTTTACTT TAAAAGGTGA TAATTTTCGT TATGTTGCAG ATTTTGATGG AATTTTAAAA 
GGACCTAAGA GAACTTTTGA ATTTAAAGAT TTCGATATTA TTGTGTCGCA ATTTAACCCA 
ACTAGTATGC GTTTGGTCTT AAGTTCAAAA AAAGAATTAA AGATCAAAAT AGAGCTTAAA 
GATCAAAGTC TTTTTATGGG GCTTGAAAAA GTAGAAAAAA AAGAAGAGCC CAAACCTATA 
GTTAAAAAAC AAGAAGAAGC TAAAAAAACA GAAGTAAAAA AAGAAGTTGT TAAAAATGAG 
CCTTTATATA TTTTAAAATC AAGTAAAGAT AAAAATGGTG TTAATTTAAA ATTAAACAAC 
GATATTGATT TTGAAGATGT TAAAATCAAT TCTTTTAAAG ATGGTAAAAC ATATCGTTCT 
ATTGTAAGTT TTGAAGCTAT TTTAGAGGGT GATAGAAAAA AAATCGACAT CAATAAAAAT 
CAATCCATCA CAATAGTGCA ATTTAATAAA ACTACAGTAA GAGTTGTTTT AAATTCTACT 
AGTGATTTTA AAACCAATCT TGATTTAGAC GATGAGGAAT TATTTATAGG CTTTGAAAAA 
AAGGCTAAAA AAATACCGAC AAAAACTACC TCAAAAACAG CAAAAACTGC TATTAAAAAA 
TCAGGTAAAA TCATAGTAAT TGATCCAGGT CATGGAGGTA AAGATCCAGG TACTTTAGGT 
GATAAGGGTG TTAGAGAAAA AGATGTAGTT TTAAGCGTTG CTTTAAAGCT TGGTAATGAG 
CTTAAAAAAC GAGGGTATAA AATTTATTAT ACTAGAAGTA CGGATAAATT TATAAATTTA 
AGAGATAGAA CCTCTATGGC AAATGAAAAA ATGGCGGATT TATTTATTTC TATCCATGCA 
AATGCAGCGC CAAATAAACA AAGAGCCAAA ACTTTGCAAG GCATTGAAAC TTTCTTTTTA 
TCTCCTGCAA GAAGTGAAAG AAGTAAAAAA GCTGCTGAGT TAGAAAATCA ATCAGATTTT 
GAAGAGATGA ATTTCTTTTC AAAACAAACT TTTTTAAATT TTCTAAATCG CGAAAAAATA 
GTAGCTTCAA ATAAATTAGC AATTGATGTT CAAAAAAGCA TTTTAAGCAA TGTAAGAAAA 
AAATATAAAG TTGTAGATGG TGGAGTTAGA GAAGCTCCTT TTTGGGTTTT AGTGGGTGCG 
CAAATGCCTG CTATATTGAT TGAGACAGGT TATATTAGTC ATCCTAGTGA AAGAAATAGA 
TTAACAAATA AAAATTTTCA AGAATTATTA GCTATTGGTA TTGCTAATGG TATAGAGAGT 
TATTTTTATA AAAATCAATG A 

 

Protein sequence

MLRIFFIFLL FCFSVFANAE VKKFDQNFLT SNSEEKLQLH QQLKSLYIQS VINDNNEEKN 
EILKRLIISS NSLGFDDKAY VQELKESGVS EEEISRLKNA LKVIQDQKVK KEQTKIETNT 
TLPINKKEDK KEDKKEDKKE DKKEDKKEDK KEDKKEDKKE DKKEDKKVLA QKELFVLDVK 
KLDNGILLDL SEKISQKDIK NFTLKGDNFR YVADFDGILK GPKRTFEFKD FDIIVSQFNP 
TSMRLVLSSK KELKIKIELK DQSLFMGLEK VEKKEEPKPI VKKQEEAKKT EVKKEVVKNE 
PLYILKSSKD KNGVNLKLNN DIDFEDVKIN SFKDGKTYRS IVSFEAILEG DRKKIDINKN 
QSITIVQFNK TTVRVVLNST SDFKTNLDLD DEELFIGFEK KAKKIPTKTT SKTAKTAIKK 
SGKIIVIDPG HGGKDPGTLG DKGVREKDVV LSVALKLGNE LKKRGYKIYY TRSTDKFINL 
RDRTSMANEK MADLFISIHA NAAPNKQRAK TLQGIETFFL SPARSERSKK AAELENQSDF 
EEMNFFSKQT FLNFLNREKI VASNKLAIDV QKSILSNVRK KYKVVDGGVR EAPFWVLVGA 
QMPAILIETG YISHPSERNR LTNKNFQELL AIGIANGIES YFYKNQ