| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cla_0344 |
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| Symbol | hsdR |
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| ID | 7410252 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Campylobacter lari RM2100 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012039 |
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| Strand | + |
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| Start bp | 316474 |
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| End bp | 318786 |
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| Gene Length | 2313 bp |
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| Protein Length | 770 aa |
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| Translation table | 11 |
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| GC content | 30% |
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| IMG OID | 643717476 |
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| Product | type I restriction-modification system, R subunit |
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| Protein accession | YP_002574955 |
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| Protein GI | 222823381 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG4096] Type I site-specific restriction-modification system, R (restriction) subunit and related helicases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.00000108762 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGAACTTA AGCATTTTTC AGAAGATGAT ACTAGAGTAA AACTCATAGA TATTAAACTT
CAAGCAAGCT CTTGGAGCGA AGAAAATATC ACAAGAAATT ATTATTTTAC AGATGGACGT
AAGCTTATAG GTGGTAAAAG AGCACAAAGA AAATTTGCTG ATTATTTACT AAAATTTCAA
AATAACAACC TTGCTATCAT AGAAGCTAAA AAATTTAGTA AAGATCCTTT AGATGGCCTG
TCTCAAGGCA TAGAATATGC AAAAATTTTA AATGTGCCTT TTGTATATAG CACTAATGGT
GAAAAAAATT ATGAATATGA TATGAGAAGC CACGATGGAA AATACATAGA CAAATTTCCA
ACTCCAAATG AGCTTTTTAC TAGAATTTAT GGAAATTTAA AAGAATGGCA ACACAAGCTT
TTATCACAAA AAGAATTATA TATACCGCAA AAAGAATTAA GGTATTATCA AAAAATAGCC
ATAGATAAAG TCATAGAAGC CATCATAAAT GATAAAAATA GAATTTTACT CACTCTTGCT
ACTGGCACAG GAAAAACTAC TATAGCTTTT AATTTGTGTT ATCGTTTGTT AGAAGCAAAA
TGGAATAAAG AAAACAAAGA TCAAAAACCT AAGATATTGT TTTTATGTGA TAGAGTAAGT
TTAAGAGATC AAACCTTAGG AGAATTTAAT CCCATAGAAA GTGATTGCAA GGCAATTAGC
GCTCAAGAGA TAAAGAAAAA TAATGGAAAA ATCATAACAA ATGCAAATGT TTTCTTTGGA
ATTTATCAAA GCTTAGCTGC AAATTCAAAA GAACAAGAAA ACACTCAAGA AGAACAAGAG
AGTAAATTTT ATCTTCAATA CCCAAAAGAT TTTTTTGATC TTATCATCAT AGATGAGTGC
CACAGAGGTG GAGCAAATGA AGAGGGGAGT TGGAGAGCTG TGCTTGAGTA TTTTTCTTAT
GCGACTCAGC TTGGCTTAAC CGCTACTCCA AAAAAAGAAG AAAATATAGA CACTTATGAG
TATTTTGGTG AGAGTGTTTA TGATTATAGT CTTAAAAGTG GCATTGAAGA TGGATTTTTA
ACACCTTATA AAGTTAAACT CATAAAAACA ACTTTGAGTG ATGGCTATAC TTATAATCCT
GATGATTTGA TACAAGGTGA GCTTGAAAAA GGCTTTTATA AACAAAGTGA ATTTGAACGA
AATATCTTTT TACCAAACTA TAATGACTTT ATCGCTAAGA AAATTTTAGA ATTTATAAAT
CCTATGGATA AAACTATAAT TTTTTGTGCA AATCAAGCTC ATGCAAGCGA AGTAAAAAGA
GCTATAGATA AATACAAAAG TGTTAAAAGA GATGATTATT GTGTAAGAGT TACGAGTGAT
GAAGGTAAAA TAGGGCTTGA TTATTTGAAA TTGTTTCAAG ATAATGATAA AAGCTATCCT
GTCATACTTA CTAGTTCTAA AATGCTTACA ACTGGAGTGG ATGCAAAAAA TGTGCGAAAT
ATAGTATTGC TAGCAAATAT AGGTTCTATG GTGGAATTTA AGCAAATCAT CGGACGTGGA
ACTAGAGTAT ATGAAGGTAA AGACTTTTTT ACCATACTTG ATTTTGTTGG CGCTACTAAG
CTTTTTTATG ATCCAAAATG GGATGGTGAA AAAATAGAAG AGCTAAAAGA AAAAGATGAA
AAAGAAAAAA ATACTAAAGA GCATATAAAG CAAGCAAAGG AAGAAAACAA AGAGAAAAAG
AGCGTAACTA TATACTTAAA AGGCACGAAA TTAAAGGTTT TAGACATTAC CACAAGTTAT
GTAGGAGCAC AAGGAAAGCC ACTTAGTACT AAGGAATTTT TAGAATTTTT GATAGGAAAG
CTTGGTGAGT ATTATGATGA TGAAGCAAAA TTGCGTGAAA TTTGGAGTGA TCAAAAAAAT
AGAGAAAGAT TTTTAAAAGC CCTTGCAAAT GATGGAGTAG ATGAAGATGC TTTAAAAGAT
CTAAGAAAAA TTTTTCAAAA AGATTGTGAT ATATACGATG TTTTAGCGCA TTTAAGCTTT
AATGCCGAGA TAAAAACAAG GCAAGAGCGT GTTTTACAAG TAGAAAATGG TGAGTTTTTA
AAACGCTTTC AAAAAGAAAA GGCTATAAAA TTTATAGAAT TTTTACTAAA TAGATATCAA
GAATACGGCA TAAAAGATTT TGATGATGGC TTAAAACCGC TTATAGAGCT TAGTTCTTTA
GGCAATGTAA GAGAATTGGC CGATGAATTT GGTGGCTTAG AAATTCTAAA ACAAAGTTTT
GATGATTTAC AAAGGGAGAT TTATTTAAAT TAA
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| Protein sequence | MELKHFSEDD TRVKLIDIKL QASSWSEENI TRNYYFTDGR KLIGGKRAQR KFADYLLKFQ
NNNLAIIEAK KFSKDPLDGL SQGIEYAKIL NVPFVYSTNG EKNYEYDMRS HDGKYIDKFP
TPNELFTRIY GNLKEWQHKL LSQKELYIPQ KELRYYQKIA IDKVIEAIIN DKNRILLTLA
TGTGKTTIAF NLCYRLLEAK WNKENKDQKP KILFLCDRVS LRDQTLGEFN PIESDCKAIS
AQEIKKNNGK IITNANVFFG IYQSLAANSK EQENTQEEQE SKFYLQYPKD FFDLIIIDEC
HRGGANEEGS WRAVLEYFSY ATQLGLTATP KKEENIDTYE YFGESVYDYS LKSGIEDGFL
TPYKVKLIKT TLSDGYTYNP DDLIQGELEK GFYKQSEFER NIFLPNYNDF IAKKILEFIN
PMDKTIIFCA NQAHASEVKR AIDKYKSVKR DDYCVRVTSD EGKIGLDYLK LFQDNDKSYP
VILTSSKMLT TGVDAKNVRN IVLLANIGSM VEFKQIIGRG TRVYEGKDFF TILDFVGATK
LFYDPKWDGE KIEELKEKDE KEKNTKEHIK QAKEENKEKK SVTIYLKGTK LKVLDITTSY
VGAQGKPLST KEFLEFLIGK LGEYYDDEAK LREIWSDQKN RERFLKALAN DGVDEDALKD
LRKIFQKDCD IYDVLAHLSF NAEIKTRQER VLQVENGEFL KRFQKEKAIK FIEFLLNRYQ
EYGIKDFDDG LKPLIELSSL GNVRELADEF GGLEILKQSF DDLQREIYLN
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