Gene Cla_0240 details

Gene Information

• Locus tag: Cla_0240
• Symbol: mnmA
• ID: 7410963
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Campylobacter lari RM2100
• Kingdom: Bacteria
• Replicon accession: NC_012039
• Strand: +
• Start bp: 212115
• End bp: 213131
• Gene Length: 1017 bp
• Protein Length: 338 aa
• Translation table: 11
• GC content: 30%
• IMG OID: 643717375
• Product: tRNA-specific 2-thiouridylase MnmA
• Protein accession: YP_002574854
• Protein GI: 222823281
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0482] Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain
• TIGRFAM ID: [TIGR00420] tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase

Plasmid Coverage information

• Num covering plasmid clones: 50
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAAATTC TAGTTGCAAT GAGCGGGGGT GTAGATAGTA CTGTTACTGC TTATAAACTA 
AAACAAGCTG GACATGAAAT AATAGGCTGT TATATGAAAC TTCATGGAAA GCCAAATTAT 
CACGAAGAAA ATATACAAAA AGTAGAAAAA GTTGCAAATT TTTTAGGTAT TAAATATCAT 
ATTTTAGATT TGCAAGAAGA TTTTAAAAAT CAAGTTTATA TGCCTTTTAT AAATACTTAT 
AAAGATGGAA AAACTCCAAA TCCTTGCGCT TTGTGTAATC GTTTTATAAA ACTTGGAAAA 
TTATTAGAAT TTGCTAAAAG TTTAGGTTGT GAAAAATTAG CCACAGGTCA TTATGCAAGG 
ATAGAAAATG GCTTGATAAA AACTGCATTT GATGATAGCA AAGATCAAAG TTATTTTTTA 
GCAAATGCAG ATAAAGAGGC TTTAGAGTAT TTGATTTTCC CTCTTGGAGA GATGAAAAAA 
GAAGATGTGA AAAAATTTGC ATCTACTATA GAGGTACTAA AATCTTTTGC AACACAAAAG 
GAAAGTTCTG AGATTTGTTT TGTGGAAGAT ACTTATGTGC AAGTTTTAGA TCAGTTTATG 
GATACTAAAA TTCCAGGTAT TGTAAGAGAT AGTAGTGGAA AAGAAGTAGG AAAACACGAA 
GGTTATATGC ATTATACCAT AGGTAAAAGA AGAGGTTTTG AGGTGCGTGG GGCTCATGAG 
CCACATTTTG TATTAAAAAT TGATCCTAAA AAAAATGAAA TCATAGTGGG TAAAAAAGAA 
GAGCTTAAAA TAAATGAATT TGATTTAGAA AAGATAAATT TATTTATAGA TGCTAAAGAG 
TTAGATTGTG AAGTAAAAAT ACGCTATAGA TCAAGATCAA CCCCATGTAA AGTAATGATA 
AATGATGATA AAAGCGCTAA GGTAATATTA AAAGAGCCTG TTTATGGACT TGCTAGCGGA 
CAAATGGCTG TGTTTTACGA TAAAGATTTA GTGCTTGCAA GTGGATTTAT AAATTAA 

 

Protein sequence

MKILVAMSGG VDSTVTAYKL KQAGHEIIGC YMKLHGKPNY HEENIQKVEK VANFLGIKYH 
ILDLQEDFKN QVYMPFINTY KDGKTPNPCA LCNRFIKLGK LLEFAKSLGC EKLATGHYAR 
IENGLIKTAF DDSKDQSYFL ANADKEALEY LIFPLGEMKK EDVKKFASTI EVLKSFATQK 
ESSEICFVED TYVQVLDQFM DTKIPGIVRD SSGKEVGKHE GYMHYTIGKR RGFEVRGAHE 
PHFVLKIDPK KNEIIVGKKE ELKINEFDLE KINLFIDAKE LDCEVKIRYR SRSTPCKVMI 
NDDKSAKVIL KEPVYGLASG QMAVFYDKDL VLASGFIN