Gene Cla_0236 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCla_0236 
SymbolfliA 
ID7410959 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCampylobacter lari RM2100 
KingdomBacteria 
Replicon accessionNC_012039 
Strand
Start bp208913 
End bp209599 
Gene Length687 bp 
Protein Length228 aa 
Translation table11 
GC content32% 
IMG OID643717371 
Productflagellar biosynthesis sigma factor 
Protein accessionYP_002574850 
Protein GI222823277 
COG category[K] Transcription 
COG ID[COG1191] DNA-directed RNA polymerase specialized sigma subunit 
TIGRFAM ID[TIGR02479] RNA polymerase sigma factor, FliA/WhiG family
[TIGR02937] RNA polymerase sigma factor, sigma-70 family 


Plasmid Coverage information

Num covering plasmid clones56 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCAGCCGC ATAATGCATA TGCATCTGCT TTAAAAAAAG AGCAAGATGA TTTAGTCATT 
TCATATATGC CAGCTTTAAG GGCTATGGCA TTTAGACTAA AAGAGCGTTT GCCAGCTAGT
ATTGATGTTA ATGATTTAAT TAGCATTGGT GTTGAAGAGA TGATTAAACT CTCGCGCCGT
TATGATAAAG AACAAAATGA TAATTTTTGG GGTTTTGCAA GAAAAAGAGT AAATGGGGCT
ATGCTTGATT ATCTAAGAAG CCTTGATGTA ATGAGTAGAA GCAATAGAAA AATTATCAAA
GATATCGATG TTATAGTTGA TGAGTATTAT CAAGAAAATG AAAAAGAGCC AGATGATGAG
TATTTGGCAC AAAAGCTAAA TTTAGAAGTA GAAAAAGTAA AAGAAGCAAG AGCAGCTCAT
GCAATCTCGC TTGTGATGCC TTTAGATGAA CAGCTAAATT GCTTTAATGA TAGCAATATA
ATAGAACAAA TTGAAAAAGA AGAATTGATA GAAAAAATCA ATGCGGTTTT AGAAGAATTT
AAAGAAAGAG AAAAATTAGT TATACAGCTT TATTATTACG AGGAATTAAA TTTAAAAGAA
ATCGCAGAGA TTTTAGAGAT AAGCGAGTCA AGAATTTCAC AAATTCACAA ACGCTTATTA
AAGAAAATTC GTGAGAGGTT AGCTTAG
 
Protein sequence
MQPHNAYASA LKKEQDDLVI SYMPALRAMA FRLKERLPAS IDVNDLISIG VEEMIKLSRR 
YDKEQNDNFW GFARKRVNGA MLDYLRSLDV MSRSNRKIIK DIDVIVDEYY QENEKEPDDE
YLAQKLNLEV EKVKEARAAH AISLVMPLDE QLNCFNDSNI IEQIEKEELI EKINAVLEEF
KEREKLVIQL YYYEELNLKE IAEILEISES RISQIHKRLL KKIRERLA