| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cla_0161 |
|---|
| Symbol | topA |
|---|
| ID | 7410884 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Campylobacter lari RM2100 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012039 |
|---|
| Strand | - |
|---|
| Start bp | 138777 |
|---|
| End bp | 140864 |
|---|
| Gene Length | 2088 bp |
|---|
| Protein Length | 695 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 29% |
|---|
| IMG OID | 643717296 |
|---|
| Product | DNA topoisomerase I |
|---|
| Protein accession | YP_002574775 |
|---|
| Protein GI | 222823202 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0550] Topoisomerase IA |
|---|
| TIGRFAM ID | [TIGR01051] DNA topoisomerase I, bacterial |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 36 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAACT TAATAATAGT AGAATCACCC GCTAAGGCAA AAACTATAGG AAATTTTTTA
GGAAAAGATT ATGAAGTAAT AGCTTCTAAA GGTCATATTA GAGATTTGCC AAAAAGTAGT
TTTGGTATAA AAATAGAAGA TGAAAATTTC AAACCAGAAT ATAGAATTTC AAGCGATCAT
TCTACTTTAG TAAAAGAATT AAAAGAAAAA GCAAAAAATG CAAAACAAAT CTATCTTGCA
ACCGATGAGG ATCGCGAAGG AGAAGCTATA GCTTATCACA TAGCAAAAGC TATAAATAAA
GATGAAAATT CATTACCTAG GATAGTTTTT CATGAAATTA CAAAATCAGC TATAGAAAAT
GCACTAAATA ATCCAAGACA TCTTGATATA AATAGCGTTA ATGCCCAACA AGCTAGACGC
TTGCTTGATC GCATTGTAGG ATATAAATTA AGCCCTTTGT TAAATCAAAA AATTCAAAAA
GGTCTTAGTG CAGGCCGTGT TCAAAGTGCG GCATTAAAAA TCATAGTAGA TAGAGAAAGA
GAAATTAAAG CTTTTACTCC TTTAAAGTAT TTTAGTATCG ATGTAATTTT TAAAAAAGAT
TTAGAAGCTG AATTGGTAGA ATTTCAAGGC CAAAAAATAG AAAAATTTAC CATAACTAAC
GAAGATAGAG CAAAATTAAT CTTTGAAAAT TGCAAAAATG CTAAATTTAA AATAAATAAT
ATAGAAAGCA AAGATAGAAA AATAACCCCA CCACCACCTT TTATGACTTC TACTTTGCAA
CAAAGCGCTA GCAATCGCTT AGGGTTTAAC CCTAAAAAAA CTATGATGAT AGCTCAAAAG
CTTTATGAGG GCGTAAAAAC TCATCAAGGC ATTATGGGCG TGATCACTTA TATGAGAACT
GATAGTTTAA ATATAGCTAA AGAAGCATTA GAGCAAGTAA GAAAACTTAT AAAAGATGAA
TTTGGAAAAG AATATTTACC AGCTAAAGCA AACATTTATA CTACAAAAGC CAAAGGCGCT
CAAGAAGCAC ATGAGGCTAT AAGACCTACG AATTTAAGCT TTACTCCAAA ACTTGCAAGT
GAGTTTTTAG AAAAAGATGA AGCAAGATTA TATACTTTAA TATACAATCG CTTCTTAGCT
TCACAAATGA ACCCTGCTAT CTCTCAAACT CAAAATGTCT ATGCAAAATC AAATGAAGCA
AGTTTTAAAA TAAGTGGTAG AAAAATTTTA TTTGATGGAC ATTATAAAGT ATATGGAGAT
ATGGATAAAG ATAAAATTTT ACCTAATTTA AAGCTAGAAG ATACATTAAA TATCCAAAAT
ATAGAATTCA ACTCACATTT TACCGAGCCA CCTTCTAGAT ATTCTGAAGC TGGACTTGTA
AAAAAACTTG AAAATTTAGG CATAGGACGC CCTTCTACTT ATGCTCCAAC TATTTCTTTA
CTTAGCGCAA GAGATTATGT GCGTATAGAT AAAAAACAAC TTATCCCAAA TGAAATAGCA
TTTAATGTAA TAGAAGTTTT AGAACAAAAT TTTAGCGATA TAGTAGATAG TGATTTTACT
TTTAAAATGG AAGAATCTTT AGATGAGATA GCAGAAGGAA AACTTGATTG GCAAGAGCTT
TTAAGAGAAT TTTACTTTCC TTTTATGAGA AAAATTGATG AGGGTAAAAA AAATATAAAA
AGCCAAAAAA CTATTACAAA AATAGATGAA ACTTGCCCTG ATTGTGGTGG CGAGCTTGCT
ATAAGAAAAG GAAGATATGG AGAATTTATA GCATGTTTAA ATTTTCCAAA ATGTAAATAT
TCAAGAAATT TAAAACAAGA AAACAAAAAT GAAGAAAAAA CTCAAATCAA ACAAGTAAAT
TCAATAGGAT TAACTTGTCC AGAGTGTAAA AAAGGTGAGA TAGTAGAGCG TTTTTCTAAG
CGTGGTAAAT TTTATGGATG TAGTGCTTAT CCAAAATGTA ATTTTATAAG CAAATACAAG
CCGAGTGAAG AAAAATGCGA AGAATGTGGT GAAAATTTAA TAATTAAAGA ATTAAAAAAA
GGCACATTTT TAGAATGCTT AAAATGTAAA ATCAAAAAGG AAATCTAA
|
|---|
| Protein sequence | MKNLIIVESP AKAKTIGNFL GKDYEVIASK GHIRDLPKSS FGIKIEDENF KPEYRISSDH
STLVKELKEK AKNAKQIYLA TDEDREGEAI AYHIAKAINK DENSLPRIVF HEITKSAIEN
ALNNPRHLDI NSVNAQQARR LLDRIVGYKL SPLLNQKIQK GLSAGRVQSA ALKIIVDRER
EIKAFTPLKY FSIDVIFKKD LEAELVEFQG QKIEKFTITN EDRAKLIFEN CKNAKFKINN
IESKDRKITP PPPFMTSTLQ QSASNRLGFN PKKTMMIAQK LYEGVKTHQG IMGVITYMRT
DSLNIAKEAL EQVRKLIKDE FGKEYLPAKA NIYTTKAKGA QEAHEAIRPT NLSFTPKLAS
EFLEKDEARL YTLIYNRFLA SQMNPAISQT QNVYAKSNEA SFKISGRKIL FDGHYKVYGD
MDKDKILPNL KLEDTLNIQN IEFNSHFTEP PSRYSEAGLV KKLENLGIGR PSTYAPTISL
LSARDYVRID KKQLIPNEIA FNVIEVLEQN FSDIVDSDFT FKMEESLDEI AEGKLDWQEL
LREFYFPFMR KIDEGKKNIK SQKTITKIDE TCPDCGGELA IRKGRYGEFI ACLNFPKCKY
SRNLKQENKN EEKTQIKQVN SIGLTCPECK KGEIVERFSK RGKFYGCSAY PKCNFISKYK
PSEEKCEECG ENLIIKELKK GTFLECLKCK IKKEI
|
|---|
| |