| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Athe_2181 |
|---|
| Symbol | |
|---|
| ID | 7408374 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Anaerocellum thermophilum DSM 6725 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012034 |
|---|
| Strand | - |
|---|
| Start bp | 2308857 |
|---|
| End bp | 2310938 |
|---|
| Gene Length | 2082 bp |
|---|
| Protein Length | 693 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 39% |
|---|
| IMG OID | 643716546 |
|---|
| Product | DNA topoisomerase I |
|---|
| Protein accession | YP_002574029 |
|---|
| Protein GI | 222530147 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0550] Topoisomerase IA |
|---|
| TIGRFAM ID | [TIGR01051] DNA topoisomerase I, bacterial
[TIGR01057] DNA topoisomerase I, archaeal |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.0024842 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGAAAAAAC TTGTCATTGT AGAGTCACCT GCAAAGGCAA AAACAATTGC AAAGTATCTT
GGTAAAGAGT TTAAAGTAGA AGCTTCAATG GGGCATGTAA GGGACCTTCC CAAGAGTGAT
TTGGGCGTTG ATATAGAAAA TGGTTTTGTC CCTAAGTATA TAAACATCAG AGGTAAGGCA
GATGTAATAA ACAAGCTAAA AAAATATGCA CAAGAAGCAG AGAAGGTATA CCTTGCAACA
GACCCCGACA GGGAAGGCGA GGCAATCTCA TGGCATTTAG CAACTATTTT AGGGCTTGAT
ACAAACGATA ATGTGAGAAT TACATTCAAT GAGATAACAA AAAAGGCTGT ACAGGAATCT
TTGAAAAATG CAAGGCCAAT TGACCAGAAC TTAGTTAATG CCCAGCAAGC CAGAAGAATT
TTAGACAGAC TTGTCGGCTA CAAGCTAAGT CCATTTTTGT GGGAAAAGGT CAAGGGTGGA
CTTTCTGCAG GAAGAGTTCA GTCTGTTGCA ACAAGGCTTG TGGTTGAAAG AGAAGAAGAG
ATAGAAAATT TTAAGCCTGA AGAGTACTGG ACCTTAGAAG CTGTATTTAA AAAAGATGTC
CAAGAGTTTA AGGCAAAGTT CTATGGAGAT AAGAAAGGGA AGATAGAGCT AAAAAATCAA
GATCACGTTC AAAAAATTGA AGAAAAGATA AAAAATAAAG AATTCAAGGT TGTAAAGATA
AAGGTGTCAG AGAAGAAGAA AAATCCGCCC CCACCTTTTA TAACAAGCAC ACTTCAGCAG
GAGGCATCAA GAAAACTGAG ATTTACTCCT GCAAAGACAA TGGCAGTTGC GCAGATGCTG
TATGAAGGTG TTGAGATAAA AGGTGAGGGA AGTGTTGGAC TTATAACATA TATGAGAACA
GATTCAACAA GGGTTTCTGA AGAGGCACAG CAGGCAGCAA GAAGTCTTAT CGTACAGAAG
TTTGGCAAAG AATATCTTCC TGAAAAGCCG AGGGTTTACA AGACAAAAAA AGATGCGCAG
GACGCTCATG AGGCTATAAG ACCTACTTAT TTGGATATGG ACCCTGAGAG TATAAAAGAT
TCTCTGACTC TTGATCAGTA CAAGCTGTAC AAACTCATTT ATGACAGATT TTTAGCGTCG
CAGATGGAAA GCAGCGTATA TGAGGTTCTT TCAGCCGAGC TTGAAGTTGA GGGTTATATT
TTTAAACTCA CAGGTTCAAA GCTCAAGTTT GCAGGGTTTA TGGAAGTATA TGTTGAAGGT
AAGGATACAG AAGATGAAGA GGAGGAAAAT CAGCTTCCAG AAATTAGAGA AGGAGAGGCT
TTAAAGCCCA TAAAACTTGA GAGCAAACAG CATTTTACTC AACCGCCTTC TCGCTATACT
GAAGCAACCT TAATAAAGGC TTTAGAAGAA AATGGGATAG GAAGACCCAG CACATACGCT
CCAACAATCC AGACAATTCT GGAGAGAGGA TATGTTGCCA AAGAAGATAG GTTTTTAAAA
CCAACCGAAT TGGGCAGAAT TGTAACAAAT ATACTTAAAG AATATTTCAA AGACATAATA
GACATTGAAT TTACTGCAGA GCTTGAGAGC AACCTTGACA AAATTGAGGA AGGAAAACTT
GAGTGGACAG AGGTGGTAAA AAAATACTAC CAGCCACTTG AAAAAGAACT TGAGATAGCA
CGAGCTACTT TGCTAAAGGT TAAGGTTGAG GATGAGGAGA CAGACATTGT ATGCGAAAAC
TGTGGAAGAA AAATGGTGAT AAAAAAAGGT AGATACGGAA AGTTCTTGGC ATGTCCAGGA
TATCCTGAAT GCAAAAACAC AAAACCTTAT TACGATTACC TTGATGTGTT GTGTCCAAAG
TGCGGCAAGA GGATAATAGA AAAGAAGTCC AAGAAGGGCA AGAGATATTA CACGTGCGAG
GGGTATCCTG ACTGTGACCT AATTTTGTGG GAAAAACCAG TCAAAAACTG TCCGAAGTGT
GGCAGTCTCA TGTTTGAAAA GGGCAAGAAA GGGAATAAAA AGCTTGTATG TTCAAATGAA
AACTGTGCTT ACCAAGAAAA AACGGGGGAA AAAGGTGAGT AA
|
|---|
| Protein sequence | MKKLVIVESP AKAKTIAKYL GKEFKVEASM GHVRDLPKSD LGVDIENGFV PKYINIRGKA
DVINKLKKYA QEAEKVYLAT DPDREGEAIS WHLATILGLD TNDNVRITFN EITKKAVQES
LKNARPIDQN LVNAQQARRI LDRLVGYKLS PFLWEKVKGG LSAGRVQSVA TRLVVEREEE
IENFKPEEYW TLEAVFKKDV QEFKAKFYGD KKGKIELKNQ DHVQKIEEKI KNKEFKVVKI
KVSEKKKNPP PPFITSTLQQ EASRKLRFTP AKTMAVAQML YEGVEIKGEG SVGLITYMRT
DSTRVSEEAQ QAARSLIVQK FGKEYLPEKP RVYKTKKDAQ DAHEAIRPTY LDMDPESIKD
SLTLDQYKLY KLIYDRFLAS QMESSVYEVL SAELEVEGYI FKLTGSKLKF AGFMEVYVEG
KDTEDEEEEN QLPEIREGEA LKPIKLESKQ HFTQPPSRYT EATLIKALEE NGIGRPSTYA
PTIQTILERG YVAKEDRFLK PTELGRIVTN ILKEYFKDII DIEFTAELES NLDKIEEGKL
EWTEVVKKYY QPLEKELEIA RATLLKVKVE DEETDIVCEN CGRKMVIKKG RYGKFLACPG
YPECKNTKPY YDYLDVLCPK CGKRIIEKKS KKGKRYYTCE GYPDCDLILW EKPVKNCPKC
GSLMFEKGKK GNKKLVCSNE NCAYQEKTGE KGE
|
|---|
| |