Gene Athe_1560 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAthe_1560 
Symbol 
ID7409069 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAnaerocellum thermophilum DSM 6725 
KingdomBacteria 
Replicon accessionNC_012034 
Strand
Start bp1651801 
End bp1652478 
Gene Length678 bp 
Protein Length225 aa 
Translation table11 
GC content41% 
IMG OID643715933 
Productspore cortex-lytic enzyme 
Protein accessionYP_002573431 
Protein GI222529549 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG3773] Cell wall hydrolyses involved in spore germination 
TIGRFAM ID[TIGR02869] spore cortex-lytic enzyme 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGGTGTA TAAAAGCATT AATACTACTA ATACTTTTGA GTTTGAGCGT ATATACTATA 
GCAAACTATC AACACCTTAA ATTCAAATAT GCTCTTTCTC CAATTATTCT TTCATACTAT
GGCTCTACAG GGCCAGAGGT TATTGAAATA CAAAAAAGAC TTAAGCAGTG GGGATATTAC
GATGGGCCAA TTGACGGTAT TTATGGATAT AAAACATATA TGGCAGTAAG ATACTTTCAG
GCAAAAAACG GCCTTAAAGT AGATGGAATT GCAGGAAGCG AAACTCTCAG GGCACTTGGA
ATTGTCACAA CAACACGTTC ATCGTACAGT TCAGACCTCA ACCTTCTTGC TCATCTTATC
AGCGCAGAAG CGCGGGGAGA ACCTTATGTC GGACAAGTTG CAGTAGGAGC AGTGGTGCTA
AATAGAGTAA GACATCCAAG CTTTCCAAAT TCAATAGCAG GTGTGATCTA CCAACCAGGT
GCTTTTGAGT CTGTAGCAAA CGGCCAGATA AACCTTTCGC CGACAGTATC AGCAATAAAC
GCTGCAAGGG ATGCACTAAA TGGCTGGGAC CCAACAGGTG GCGCAATTTA CTTTTTCAAC
CCTGCAAAAA CTACAAATAA ATGGATTTGG AGCAGACCAA TTGTAGCTGT CATAGGCAAT
CATGTATTCG CAAGGTAA
 
Protein sequence
MRCIKALILL ILLSLSVYTI ANYQHLKFKY ALSPIILSYY GSTGPEVIEI QKRLKQWGYY 
DGPIDGIYGY KTYMAVRYFQ AKNGLKVDGI AGSETLRALG IVTTTRSSYS SDLNLLAHLI
SAEARGEPYV GQVAVGAVVL NRVRHPSFPN SIAGVIYQPG AFESVANGQI NLSPTVSAIN
AARDALNGWD PTGGAIYFFN PAKTTNKWIW SRPIVAVIGN HVFAR