| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Athe_0638 |
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| Symbol | |
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| ID | 7406979 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Anaerocellum thermophilum DSM 6725 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012034 |
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| Strand | + |
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| Start bp | 721394 |
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| End bp | 724819 |
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| Gene Length | 3426 bp |
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| Protein Length | 1141 aa |
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| Translation table | 11 |
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| GC content | 36% |
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| IMG OID | 643715019 |
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| Product | transcription-repair coupling factor |
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| Protein accession | YP_002572535 |
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| Protein GI | 222528653 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
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| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.138681 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGTTAAAGG TTTTAGAAAG GCTTGATAGT TTTAAAACTC TTGAAGAGAT TGTTGCCAAA
AAAAGCCTTC CTGTTGTTGT CACAGGCGTT GGTGAGATGG GGAAAGCGCT TGTAGTCAAG
TATTTATGTG AAAAATTTAA CAAAAAGGCG TTGTTTATAA CAACTCAAAG AGCAAAACTT
GAGTGGGAAA GAAGGTTTAA AAACCTTTTT AGTAGTGTAG TGAACCTGCA GGAAAGAGAA
AATCCGTATG TTGTATCTTT TGCAAAGAGT AGGGATTCTG AAATTACCAG AATAGAGCAG
TTTGTAAAGA TTTTTGAGGA TGGTTTTGAT GTTCTCATAT TAACTGCCCA GAACCTTTTT
GAAAAGTACA CAGATTTGAA GCTTGATTGC ATTCTTCTCA CAGAAGGTCT TGACATTCAG
CTTGAAACCC TTATAGGAAA GCTTTTAACA TTCGGGTATG AAAGAGTAAA AACTGTGGAA
AAGAAAGGAC AGTTTTCTCA AAAAGGTGGC ATAGTTGATA TATATCCTGT GGCAAGCACA
TATCCTGTGA GGATTGAGTT TTTTGGAGAT ACCATAGATA CAATTAGACT TTTTGATGTT
GAAACCCAAA AATCTTTTGA AAAAAAAGAT AGTATTAAAA TTTACAAGGC AATTGAGTGG
GATTTACAAG AAGACTTTTC AGAGGGCTTA AAACATATAA AAGATGACTA CAAAAAAACG
AAATCTAAGC TGAAAGAAGA GAGCAGAAAG AATTTAGAAG AGACTTTCAA AGAAGTGATA
GAAGGAATTC GGCTGGATGT TGAAAGGCTG TATCCATATT ACTATCAGCA ATTTTTATCA
GTTATTGATA TTTTTAGTGA ATGTCTTATT TTTGTTGACG AGTATAGTCA AGTCTACAAT
AGCTTGAAAG CTTTCGAACA AGAGACACAA GAGATCTTTT CAGACCTTTT AGAAAAAGGA
TTTGTGCTTC CAAAAATGGC AGAGTGTTAT TTTACCACGA GCGAAGTTTT AGAAAAGCTT
TCGAGGTCGA TAATTCTTCA AACATTTGTC TCAGCTATAA AGGAGCTTGA ACTCAAAGAT
ATCATTTCTT TCAATTTTTT AAGGGAGCTT CCTTCTTATA ATGGGCAGAA GGAAGTTTTA
ATAGACGATT TGAAGTATTA CATGTCCAAA AGATATACCA TAAACATCTT TACAGGAAGT
CGAACATCAC TTGAGGACTT GGCAGATGCA CTTTTAAAAG AAGATATACA GTTTTCTGAG
GCTGAAGAAC CAGAAGTAGA AAGAACGGGA GTGTATTTAA TAGCCCGGTC TATTGAAAAG
GGTATTGAAG TGCAAGATCT CAAATTGGTT TATCTTTCGT TTTTCCACCT TGAAAAGAAG
AAGGAAAATG AGACAAAAAA GAGGATAAAA TCTAAAAAGG ATGCTTTTTA TACAATTGAG
GATTTAAAAC CAGGTGATTT TGTCGTTCAC AGAACACATG GTATTGGCAA ATTCTTGGGA
TTTGAAAAGA TTACAGTTGA GGGTACAACA AAAGAATATG TAAAACTTGA ATATGCTAAC
TCTTCTTATT TGTATGTCCC AACAACAAAC TTGGATGTGA TTGAAAAGTA TATTGGAACA
GACGATGTAC AGCCAAAACT ATCTAAGCTT GGGTCACAAG AGTGGCAAAA GCAAAAACAA
AAGGTAAGAA AATCTCTTGA GATTGTAGCA AAAGACCTGG TTGAGCTTTA TGCAAAAAGG
CAGCTTGGGA AGGGTTTTAA ATTTTCAAAA GATACGCTGT GGCAGAAAGA GTTTGAAGAG
AAGTTTCCAT ATACAGAGAC AGAAGGTCAG CTTCAGGCCA TAGAAGAGAT TAAGAGGGAT
ATGGAAAGTG AAAAGCCGAT GGATAGAATA CTTTGCGGCG ATGTTGGCTA TGGCAAGACT
GAGGTTGCAA TGAGAGCAGC ATTCAAAGCT GTGATGGATT CAAAACAGGT GGCAGTACTT
GTTCCTACAA CCATTCTTGC GCAGCAGCAT TACATGACAT TTTCTGCACG AATGAAAGAT
TTTCCAGTAA CAATTGAGGT TCTCTCACGT TTAAAAAGTG AGACGCAGCA AAAGAAAATA
GTAAGAGGTT TGAGGGAAGG CACAATTGAC ATTGTAATTG GAACGCACAG GCTATTGTCA
AGCGATGTTA AGTTCAAAGA CCTTGGTCTT TTGATTATTG ATGAAGAGCA CAAGTTTGGC
GTGGAAGCAA AAGAGAAGAT TAAAAAGCTA AAAACAAATG TTGATGTGCT AACCCTCACC
GCAACGCCCA TACCAAGGAC ACTTAACATG GCACTTTTAG GAATCAGGGA TTTGAGCGTG
ATTGAAGACC CGCCGGAAGA CAGGTTTCCT GTGCAGACAT TTGTGCTTGA GTACAATGAG
AGGATAATAA AAGAAGCTAT TTTAAGAGAA ATTTCAAGAG GGGGTCAGGT ATTTTATCTT
TACAATAGGA TAAAAGATAT ACAAGAGGTG GCTGCTAAAC TTCAAAATCT TGTGGACGAC
AGTATAAAAG TTGCATGTGC TCACGGGCAA ATGCCCGAAG AAGAGTTGGA GAGAGTGTTA
CTTGATTTTA TTGAAGGCAG GTACAATGTG CTTGTGTGCA CAACAATCAT AGAGTCTGGG
GTTGACATGC CAAACGTCAA TACACTTATT GTGGAAGACA GCGATAGACT TGGTCTTGCT
CAGCTTTATC AGCTAAGAGG GAGGGTAGGT CGTTCTTCAA GGCTTGCATA TGCATATTTT
ACATTTAGAA AAGACAAGGT GCTCTCCGAA CAGGCACAAA AGAGACTTGC TGCAATAAAA
GAGTTTACAG AACTTGGGGC TGGTTTTAAA ATTGCCATGA GGGACCTTGA GATAAGAGGT
GCTGGGTCTT TGCTTGGAAA ACTTCAGCAT GGGCATATAA ACAGTGTTGG GTATGATATG
TATATAAGAC TTCTTTCAGA AGAGATAAGG CGTCTTAAAG GTGAAAATAT ACAGCCAGAG
ATTGAACCTC AAATAGATGT AAAAGTAAGT GCATTTATTA GTAGCAGTTA CATTGATGAT
GAAAAAGAGA GAATTAATAT GTATAAAAAG ATTTCGTCAA TTGAGTCAAA AGATGATGTA
AACGATATTT ATGATGAACT AATAGACAGG TTTGGGGATG TGCCAAAGGA GGTTGATAAT
CTGATAAAGG TTGCATATTT GAAATGTTTG TGCAAAAAAG CAGGTATAAT AAGTATTTTG
CAGTTTCAAG AAAGTCTTTT TAAACTTCAG TTTTTGAACA AAGAAATGCT TGAAGCTGCA
AAGATGAAGT TTTTAAGGAA AGGACTTTCA TATTTACAAA ACAGGGATGA TATGTTACAG
CTCTTGATTG CAAATAACTG GTTTGATACC TTAATAGCTA TTTTAGAAGA TTTACAAGAA
AATTAA
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| Protein sequence | MLKVLERLDS FKTLEEIVAK KSLPVVVTGV GEMGKALVVK YLCEKFNKKA LFITTQRAKL
EWERRFKNLF SSVVNLQERE NPYVVSFAKS RDSEITRIEQ FVKIFEDGFD VLILTAQNLF
EKYTDLKLDC ILLTEGLDIQ LETLIGKLLT FGYERVKTVE KKGQFSQKGG IVDIYPVAST
YPVRIEFFGD TIDTIRLFDV ETQKSFEKKD SIKIYKAIEW DLQEDFSEGL KHIKDDYKKT
KSKLKEESRK NLEETFKEVI EGIRLDVERL YPYYYQQFLS VIDIFSECLI FVDEYSQVYN
SLKAFEQETQ EIFSDLLEKG FVLPKMAECY FTTSEVLEKL SRSIILQTFV SAIKELELKD
IISFNFLREL PSYNGQKEVL IDDLKYYMSK RYTINIFTGS RTSLEDLADA LLKEDIQFSE
AEEPEVERTG VYLIARSIEK GIEVQDLKLV YLSFFHLEKK KENETKKRIK SKKDAFYTIE
DLKPGDFVVH RTHGIGKFLG FEKITVEGTT KEYVKLEYAN SSYLYVPTTN LDVIEKYIGT
DDVQPKLSKL GSQEWQKQKQ KVRKSLEIVA KDLVELYAKR QLGKGFKFSK DTLWQKEFEE
KFPYTETEGQ LQAIEEIKRD MESEKPMDRI LCGDVGYGKT EVAMRAAFKA VMDSKQVAVL
VPTTILAQQH YMTFSARMKD FPVTIEVLSR LKSETQQKKI VRGLREGTID IVIGTHRLLS
SDVKFKDLGL LIIDEEHKFG VEAKEKIKKL KTNVDVLTLT ATPIPRTLNM ALLGIRDLSV
IEDPPEDRFP VQTFVLEYNE RIIKEAILRE ISRGGQVFYL YNRIKDIQEV AAKLQNLVDD
SIKVACAHGQ MPEEELERVL LDFIEGRYNV LVCTTIIESG VDMPNVNTLI VEDSDRLGLA
QLYQLRGRVG RSSRLAYAYF TFRKDKVLSE QAQKRLAAIK EFTELGAGFK IAMRDLEIRG
AGSLLGKLQH GHINSVGYDM YIRLLSEEIR RLKGENIQPE IEPQIDVKVS AFISSSYIDD
EKERINMYKK ISSIESKDDV NDIYDELIDR FGDVPKEVDN LIKVAYLKCL CKKAGIISIL
QFQESLFKLQ FLNKEMLEAA KMKFLRKGLS YLQNRDDMLQ LLIANNWFDT LIAILEDLQE
N
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