Gene Athe_0560 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAthe_0560 
Symbol 
ID7408686 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAnaerocellum thermophilum DSM 6725 
KingdomBacteria 
Replicon accessionNC_012034 
Strand
Start bp632707 
End bp634230 
Gene Length1524 bp 
Protein Length507 aa 
Translation table11 
GC content36% 
IMG OID643714943 
ProductPeptidoglycan-binding LysM 
Protein accessionYP_002572459 
Protein GI222528577 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG1388] FOG: LysM repeat 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.0820449 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAAAGTT TATTAAGATT TTGGGTGTTT GTTGTTACAA TTATAATTCT ATCTTTATTT 
ATAGTTTCAC CTTCGTTTGC ATCTGATATT AAAAAAGAAG AAGCTCTATT TTTTGATTCA
AATGGCAACC CCTCTTATAT TACTATTATT AACAAAAGTT CAGTAGCATA TCTTTCTCCC
TATGAACTTT CAAAGGTACT GGGTGGAAAT TTTGCTTTCG ATCCAAAAGA CTATAACTTT
CTTCAGTCAA AGCTTATTGT TGACCAAAAT GAACTTATAT TCAAGCTCGA TAGCAATGTG
GTGACATTCA ATGGAAAAAA CTTTTATATG GACGGACCAA TACAAATCAT ACAAAATAGA
ATTTGTGTAC CTTATTCTAC TTTCAAAACT TACTTGAATT TATTTGAATA TCGTCATTAT
ACATCAGGAA AACGAATGAT ATTCAAGCCA AACGGAAACT ACATAGTCTA CAGTGTTCAA
AGCGGTGACT CTCTCTGGAT ATTGTCTCAA ACTTTCGGAA CATCTATTGA AACTATTAAA
AACCTCAATA GCCTTACAAG CGACACACTC TATGTTGGAC AAAAGCTAAT TGTAAAAAAG
GTAAGTATTA ACCCTGTCCA AATTACTGGA ATAATAAAGT GGTGGACATA TGTAAAAGCT
TTTCCATCTT CGTCAGCACA AAATCTATTT TATCTTACCC AGGGACAAAT TGTAAACATC
ATTGGAAAGC AATCAGAATT CTATAAAATT TCATCAGCAA AAGGAACTGG CTTTGTTTCA
ATCTGGGCAG TAGATATAAA ACAAGATATT TCTGACGTCT CAAAACCAAG TAGCTATTTT
TATTCTTATA TACCTGTTGA TACTTCAGGT GACTATGTAA GCTATACATA CTACAAGGTG
CAAAGTGGAG ATACAATATG GTCGATTGCA GTAAAATTTG GAATACCCGA CTATGAACTT
ATGTCGGCAA ATAATTTGAA TGAAAACTCA TACATCTATG CAGGACAAAC CTTAAAAGTG
CCTGTTCACA CAGTTGCTGT GCATTTAAAT GAGTACGGAG TTGAAATGCT CGACTGGTTT
TCGCAGGGAA ATTATGTATT CCCAATCGGC AGCGTTGGCA AGTTTATTGA CATCCAGACA
GGAAAATACT TTTTTGCAAA AAGGACAATG GGGGCAAGTC ATGCAGATGT TGAAACTTTG
AGCTTTAAAG ACACTCAAAT CATGAAAGAG ATATTTGGTG GAAGCTTTAC ATGGGAAAGA
CGTCCGTTTA TACTTGAAAT AAATGGTAGA AGAATAGCCG TGTCAGTTTC TGGCATGCCA
CATGCAGGGG TGGACGGCGT TCCTTACAAT CAAAATGTTG CAAACAGAAG CGGTGGATAT
GGCTACGGTC CAAACCTTGA TACAATTGTA AATGGAATGG ACGGACACTT CGATGTATAT
ACATTCAACG GTCTTCGTCA CAAAGACAAT CAAATTGACC CTCAGCATCA GTTGACAGTA
AGTATTGCAG CAGGCTTGAG GTAA
 
Protein sequence
MKSLLRFWVF VVTIIILSLF IVSPSFASDI KKEEALFFDS NGNPSYITII NKSSVAYLSP 
YELSKVLGGN FAFDPKDYNF LQSKLIVDQN ELIFKLDSNV VTFNGKNFYM DGPIQIIQNR
ICVPYSTFKT YLNLFEYRHY TSGKRMIFKP NGNYIVYSVQ SGDSLWILSQ TFGTSIETIK
NLNSLTSDTL YVGQKLIVKK VSINPVQITG IIKWWTYVKA FPSSSAQNLF YLTQGQIVNI
IGKQSEFYKI SSAKGTGFVS IWAVDIKQDI SDVSKPSSYF YSYIPVDTSG DYVSYTYYKV
QSGDTIWSIA VKFGIPDYEL MSANNLNENS YIYAGQTLKV PVHTVAVHLN EYGVEMLDWF
SQGNYVFPIG SVGKFIDIQT GKYFFAKRTM GASHADVETL SFKDTQIMKE IFGGSFTWER
RPFILEINGR RIAVSVSGMP HAGVDGVPYN QNVANRSGGY GYGPNLDTIV NGMDGHFDVY
TFNGLRHKDN QIDPQHQLTV SIAAGLR