Gene Hlac_3527 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHlac_3527 
Symbol 
ID7402370 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameHalorubrum lacusprofundi ATCC 49239 
KingdomArchaea 
Replicon accessionNC_012030 
Strand- 
Start bp273818 
End bp274873 
Gene Length1056 bp 
Protein Length351 aa 
Translation table11 
GC content59% 
IMG OID643710065 
ProductTRAP-type uncharacterized transport system periplasmic component-like protein 
Protein accessionYP_002567631 
Protein GI222481395 
COG category[R] General function prediction only 
COG ID[COG2358] TRAP-type uncharacterized transport system, periplasmic component 
TIGRFAM ID[TIGR01409] Tat (twin-arginine translocation) pathway signal sequence
[TIGR02122] TRAP transporter solute receptor, TAXI family 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCAAATG ATATGAACCG CAGCAGACGT TCCTTTCTTA AAGGCGCATC AGTCGCAGGT 
GTTCTTGGAC TCGCAGGCTG TCTCGACCAG TCAGCCGGCG GCGACGGCGA CGGCGGGGCC 
TGGACACTTG GCACTTCTTC CGAGGGGTCC TCATCGTTCG CAATTGGATC AAACTGGACG 
GAGTACGCCA GTCAAAACGA CGCACTCGAC TTCGAAGTCG ACGCGGTGAT CACCGAGGGG 
ACCGGTGCAT CGTATCGACG TATGGACAGA GGCGACTTCG AACTGAGCGG GACGACGACG 
CAACTGCTCG CAGCGTCCCC CGACACTGGC CCGTACGAAG ACGAGCCGCT CCAGGACTTC 
GATAACATCC GTCAGATTCG AGGCTACATG GGCTTCTACA ACTTCGGCCT GTACAACGCA 
GACGAGGTCG ACGGCTGGGA CGACCTCGAG GGGAGCTCAG TTGCTATTTC CTCGGCAGGG 
TCCGGGACGC GACCACCGGT CGAATGGCTT GTCGACCAGG AAGTTGGTAT GGACAACATC 
GACGCCCGAT ACATGGCTTT CGCCGACATG CCGGCCGCGA TGCGGTCCGG TCAGATAGAC 
GCGATGTTTA CCTGGACAGT CAACAAGACG AACCCGCAGG GCGCATTCCA GGAGGTCGAC 
GCAACAGTCA ACTGGGAACC GCTCCCGATC TCCGAAGCAA CCCGGGACAA GCTTCAGAAC 
GACCTGGCCT ACTTGACGTA CGTCCAGCTG GACGAGGATA CGGTCGCACA GAACACCGAG 
AACTACAGTG AACCGCTCGA CACGTTCACG CTCACGTATC TGTACGTGGC GAAGGCCGAC 
CGCGACGACG ACCGCATCTA CGACATCACG AAGTTCACCT ACGAGAATGG CGACGAGTTG 
GTCGACCGAG ATTCCGTAAT GGGCTATTTC CCGGACCCAG ATCAGTTCAT GGGTCAGCTA 
CACCCTGACA TCCCGGTCCA CAAGGGTGCC TACGACTACT ACACCGAGGA AGGTCTCTGG 
GAGGACTACG ACCTCACCCC ACCACCGGAA GCCTGA
 
Protein sequence
MANDMNRSRR SFLKGASVAG VLGLAGCLDQ SAGGDGDGGA WTLGTSSEGS SSFAIGSNWT 
EYASQNDALD FEVDAVITEG TGASYRRMDR GDFELSGTTT QLLAASPDTG PYEDEPLQDF 
DNIRQIRGYM GFYNFGLYNA DEVDGWDDLE GSSVAISSAG SGTRPPVEWL VDQEVGMDNI 
DARYMAFADM PAAMRSGQID AMFTWTVNKT NPQGAFQEVD ATVNWEPLPI SEATRDKLQN 
DLAYLTYVQL DEDTVAQNTE NYSEPLDTFT LTYLYVAKAD RDDDRIYDIT KFTYENGDEL 
VDRDSVMGYF PDPDQFMGQL HPDIPVHKGA YDYYTEEGLW EDYDLTPPPE A