Gene Hlac_3420 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHlac_3420 
Symbol 
ID7402268 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameHalorubrum lacusprofundi ATCC 49239 
KingdomArchaea 
Replicon accessionNC_012030 
Strand- 
Start bp169001 
End bp169930 
Gene Length930 bp 
Protein Length309 aa 
Translation table11 
GC content57% 
IMG OID643709963 
ProductTranscription factor TFIIB cyclin-related 
Protein accessionYP_002567529 
Protein GI222481293 
COG category[K] Transcription 
COG ID[COG1405] Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCTACCA GAGAAATCTA CGGACAAACG TTCGATGAGG ATGTATCGAG TGATCAATCT 
GCTACCTGTG TTGAATGCGG TGGTCAGATA CGCACAAACA GCATTGAAAC GGCCTGCGAG 
GACTGTGGCC TCATTATCGA TGAACAGCGG ATTGACCACG GCCCAGACTG GCGGAGCTAC 
AACGAGAAGA CAGACTCACA AAGTCGAGTG GGGCCACCGC GTACAGTGGC GCGTCACGAC 
AACGGCTTGT CGACCGAGAT TGGCCGATGG AGAGATGGAA ACGGTAACCA GCTCGCTGGA 
TCGAAGCGCA GTCGACTCTC CAGGATGCGC CGGGAGCACA GCCGTGGCCG ATTCGGGTCG 
AAATCAGAAC GGAACCTTGC ACACGGGCTC GGTGAGGTCC GTCGAATCAC GAGTGTCCTT 
GATCTCGCTG AGTCGATCCG TAACCAAGCC TGTCAGCTCT TCCGAAGTGC TCAAAACGAG 
GATCTCCTTC GCGGTCGGTC AATCGAAGCG ATAGCCGCAG GAAGTGTGTA TAGTGCTTGC 
CGGTGCAACG GGCTCGGACG AACAATCGAC GAGATCGCGG CGTTGGCCCG AGTGAATCAG 
CAGCGAGTGA TGAACGCGTA CAAAGTACTG AACCAGGAAC TCGGACTGCC CACCCAACCC 
ATTCGGCCAA GTGGGTTCGT CCCACGGCTT GCATCCGAAC TCGGCGTTTC GGATCAGGTT 
CGACATCGAG CCCAGCGGTT GGCAGAACAC TCGGAGACAG TCGACAAGAC TGTGGGTGTC 
CGTCCTTCTG GGTTCGCAGC AGCGTGTCTC TACTGTGCTA GTCAGGAATA CGGACATCCG 
CTCACACAAC GGTCAGCCGC CGATGCTGCA AATGTGACGC CAACAACTGT CCGAGCACAT 
CGAGATACGA TTGAAGGACT ACCTCTCTGA
 
Protein sequence
MATREIYGQT FDEDVSSDQS ATCVECGGQI RTNSIETACE DCGLIIDEQR IDHGPDWRSY 
NEKTDSQSRV GPPRTVARHD NGLSTEIGRW RDGNGNQLAG SKRSRLSRMR REHSRGRFGS 
KSERNLAHGL GEVRRITSVL DLAESIRNQA CQLFRSAQNE DLLRGRSIEA IAAGSVYSAC 
RCNGLGRTID EIAALARVNQ QRVMNAYKVL NQELGLPTQP IRPSGFVPRL ASELGVSDQV 
RHRAQRLAEH SETVDKTVGV RPSGFAAACL YCASQEYGHP LTQRSAADAA NVTPTTVRAH 
RDTIEGLPL