| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hlac_2587 |
|---|
| Symbol | |
|---|
| ID | 7399812 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Halorubrum lacusprofundi ATCC 49239 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_012029 |
|---|
| Strand | + |
|---|
| Start bp | 2564629 |
|---|
| End bp | 2566620 |
|---|
| Gene Length | 1992 bp |
|---|
| Protein Length | 663 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 643709659 |
|---|
| Product | TRAP transporter, 4TM/12TM fusion protein |
|---|
| Protein accession | YP_002567229 |
|---|
| Protein GI | 222480992 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG4666] TRAP-type uncharacterized transport system, fused permease components |
|---|
| TIGRFAM ID | [TIGR02123] TRAP transporter, 4TM/12TM fusion protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCACAG AAACGGCCGC GACGGAACAC GAATCCGGAC TGCTGCGGGG GCTCGACGTG
ACCGTCACGG CGGCGGCGCT GCTGTTCTGG GCCGGCGTCC TCGGTTGGGC ACACACGCAG
GCGATCTCGC AGGTGCGGTT CGCCACCGCG TTCGTGGGCG GCATCCTGAC CGTGTACGCG
CTCAACGAGA CGCGGCTCGC CATCTCGGAC GGCGACTGGA TCGACGGCGC CGTGTTGATC
GCCTCGTCGG TGGCGCTGAT GACCGCGTCG GCGTTCTTCG CGATCAACTT CCAGGACGTG
TATCTCCAAC GGCAGGGGTA CGCGCTCGAA CACGAGTACA TGCTCGCGCG CCTCGTCATC
ATCTCGCTGA TGTACCTCAC GTGGCGCGAG TTCGGGAACG TATTCCTCGG ACTCATCTTC
GCCGTGTTCG GGTACGCGAT GTACGGGAAC CTCGTCCCGG GCGTGTTGGG TCACGCGGGA
ATGCAACAGG CGACGCTGCT GCAGGCGACG GTCACCGACC TGTACGGGTT TTACGGGAGC
CTCACGCAGA TCACGGCCTC GTGGATCGCA CCGTTCCTGC TGTACGCCGG CCTGCTGTTC
GCGTACGGCG CGTTCGACCT CATCCTGCGG GTCGCCATCG TGGCGGGGAA GTACATCGAG
TCGGGAATCG CCCAGACCGC CGTGCTCTCC TCAGCGATCA TCGGCTCGAT CAACGGCTCG
TACACCGCCA ACGCGGCGAT GACGGGCTCG TTCACCATCC CGACGATGCA GGAAGCCGGG
ATGAAAGGCC ACCGCGCGGC TGGCATCGAA GCCGTCGCCT CGACCTCCGG ACAGGTGCTC
CCGCCCGTGA TGGGGGCGTC CGCGTTCGTG ATGGCGTCGT ACCTCGGTGT TCCGTACCTC
GACATCGTCG TCGCCGGCCT CGTACCGGCC GCGATCTTGG TCGTGTCCAT CTCTGTCGCC
GTCCACTACC TCGCCATCTC CGACACCAGT AGCCAGGAGA TGGAGTTCTC CGAGTTCTTC
GACGAAGAGC TCTCGACGGA AAAGAAGGTG TTCGAGGCGC TCCGCTTCGG CATCCCGTTC
GCGCTACTCA TCTACCTCCT CGGGATCGCC CAGTACACGG TGATGACGTC CGCGCTGTAC
ACGGTAGTCG CGATGATGAT CACCGGCGTA CTCATGCCGC CGCTCCAGCG GATCGTGGAC
AACTCCGGGA TCGGACCGGG AGGAGAGTTC GTCACGCAGG TGAAAAACAC CGTCCACGGG
ATCCGGCGTG GTGCCGTCAT CCTGGCACCG ATCGCGATCA TCCTGGTCGT CATCAGCGGC
GTCGTGAATC TGTTCAGCAC GACCGGCATC CCGGCGAAAC TCGCACTGCT GCTCATCAGC
ATCTCGGGCG GCGTGCTGCT GTTCGCGGTG CTGCTCGGGA TGGCCGTCGC CATCCTGATG
GGCGTCGGCA TGCCGACGGT CGCTGCGTAC GTCATCGTGG CCATCCTGAT CGTGCCGACC
TTCGTCTCCG ACTTCGGCGT CGAACCCATC ACGGCCCACT ACACGATGTT CTACGCGGCT
ATCCTCGCGG GGATCACGCC ACCCGTGGCG ACCGCAGCAG TGATAGCGGC GGGGATTGCG
GAGGCGAACT TCTGGCGGAC CTGTGGCGCT GCGATTCGGA TCGCGGCGCC GCTTTTCGTC
CTCCCGGTTG CGTTCGTCTA CAACCCCGGT CTGATCTCGA TGGATCCCGG ACTCACCACG
CTGTACGTCG GGCTGCTCGT GCTGCTCGGC GCGGTGGCGA TCATCTACGG GCTGAACTAC
CCGTTCAAGA TGCGCCCCGG GCGGAAGATC GGCACGCGCG CCCTGCTCGC GACGCTCGGT
ATCCTCATCA TGGCGTACCC GAGCAACGTC GCGAAGATTG CGGGGATCGC CGTCTTCGCC
GCCGTCTTCA TCGCTGAGAA GGTGATGATC CGCGGTCTCT CACTGCCGTT CAGCAAGGGG
GCAAGCCAAT GA
|
|---|
| Protein sequence | MSTETAATEH ESGLLRGLDV TVTAAALLFW AGVLGWAHTQ AISQVRFATA FVGGILTVYA
LNETRLAISD GDWIDGAVLI ASSVALMTAS AFFAINFQDV YLQRQGYALE HEYMLARLVI
ISLMYLTWRE FGNVFLGLIF AVFGYAMYGN LVPGVLGHAG MQQATLLQAT VTDLYGFYGS
LTQITASWIA PFLLYAGLLF AYGAFDLILR VAIVAGKYIE SGIAQTAVLS SAIIGSINGS
YTANAAMTGS FTIPTMQEAG MKGHRAAGIE AVASTSGQVL PPVMGASAFV MASYLGVPYL
DIVVAGLVPA AILVVSISVA VHYLAISDTS SQEMEFSEFF DEELSTEKKV FEALRFGIPF
ALLIYLLGIA QYTVMTSALY TVVAMMITGV LMPPLQRIVD NSGIGPGGEF VTQVKNTVHG
IRRGAVILAP IAIILVVISG VVNLFSTTGI PAKLALLLIS ISGGVLLFAV LLGMAVAILM
GVGMPTVAAY VIVAILIVPT FVSDFGVEPI TAHYTMFYAA ILAGITPPVA TAAVIAAGIA
EANFWRTCGA AIRIAAPLFV LPVAFVYNPG LISMDPGLTT LYVGLLVLLG AVAIIYGLNY
PFKMRPGRKI GTRALLATLG ILIMAYPSNV AKIAGIAVFA AVFIAEKVMI RGLSLPFSKG
ASQ
|
|---|
| |