Gene Hlac_2492 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHlac_2492 
Symbol 
ID7401544 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameHalorubrum lacusprofundi ATCC 49239 
KingdomArchaea 
Replicon accessionNC_012029 
Strand
Start bp2468706 
End bp2470163 
Gene Length1458 bp 
Protein Length485 aa 
Translation table11 
GC content69% 
IMG OID643709564 
ProductMATE efflux family protein 
Protein accessionYP_002567135 
Protein GI222480898 
COG category[V] Defense mechanisms 
COG ID[COG0534] Na+-driven multidrug efflux pump 
TIGRFAM ID[TIGR00797] putative efflux protein, MATE family 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.544481 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value0.228664 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGGGCTCC TCGACCGCGT CGACGCCCTG TTCAAGGGCC CCGATGAGTT CGACCTCACG 
TCGGGCGGGA TCGCGAAGCC GCTCTTTTTC CTCTCGATGC CGATCGTCGT CACGAACCTC
TTTCAGACGG CGTACAACCT CGCGGACACG TTCTGGCTGG GGCAGTACAG CACGGACGCG
CTGGCGGCGA TCAGCTTCGC GTTCCCGATG GTGTTCCTGC TGATCTCGCT CGGGATGGGG
ATCTCCGTCG CGGGGAGCGT GCTCGTCGCG CAGTACACCG GCGCGGGCGA GGCCCGGGAG
GCGGAGTACG CCGCCTCGCA GACGGTGACG TTCGCGGTGA TCGCCTCGGT GGTCCTCGGC
GGCGTCGGCT ACTTCTTCGT CGGCGAGTTC CTCGAGTTGA TGGGCGCGTC GGCGGACGTG
TTGCCCCTCG CGGCGAGCTA CATGGAGGTC ATCTCGCTCG GGCTCGTGGC CATGTTCGGC
TTCGCGGTGT TCATCGCGCT CATGCGCGGG TACGGCGACA CGATCACCCC CATGCTCGTG
ATGTTCGGCT CCGTCGTCCT CAACATCGCG CTCGACCCGT TCCTCATCTT CGGCTGGGGG
CCGTTCCCCG CGCTTGGGAT CGAGGGTGCG GCGATCGCGA CCGTGTTCTC TCGGGCGCTG
GCGCTTGTCG TCGGGCTGGC GATCATGTTC CGCGGGGTGC GCGGGGTCCG GATCAACGTC
GCCGACATGG TCCCCGACGC GAGCTACCTG CGCCGGCTCC TCCGCATCGG CCTGCCGGCC
TCGATCGAGG GGACCGGGCG GGCGGTCTCG ATGAACCTCC TGCTTTTCAT CGTCGCGCTG
TTCCCCGACC CGGTCGTCGC CGCCTACGGG ATCGGTACGC GGGTGTTCTC CGTGATTTTC
CTCCCGGCGA TCGCGGTCGC CCGCGGCGTC GAGACGATGA CCGGCCAGAA CATCGGGTCG
GACAAGCCCG ACCGGGCCGA ACGGGCCGCG AACCTGGCGG CCAAGACGCT ATTCGCGGTT
CTCTCGGTCG CCGGCGTCGC CGTCTTCCTC GTCCCCGAGC CGATCGTCTC GGTGTTCGTC
GGCGCGGATC AGGCCGACGC CGGCCGGGTG GTCGCGGTCG GCTCGCAGTT CCTCCGGATC
GTCGCGCTGA CCTTCGGCTT CATCGGCATC ATGCGCGCGT ACACCGGGAG CTTCCGCGGC
GCGGGGAAGA CGCTCACCGC CGCGGCCATC TCGGTGCTGA TGCTCGGCGT CGTCCGGTTC
CCGATCGCGT GGGTCGCCGC CGGTCGGATC GGCGAGACCG GCATCTGGCT GTCGTTCGCG
GTCTCGAACG TCATCGGTGC CGTCGTCGCG TACGCGTGGT ACCGCCGGGG AACCTGGCGG
AGCGGCGACC TCACTGACCG GAGCGCCGCC GGCGACGTCG ACGAGCCGGT GGTGGCCGCG
GAGTCGACGG ACGATTGA
 
Protein sequence
MGLLDRVDAL FKGPDEFDLT SGGIAKPLFF LSMPIVVTNL FQTAYNLADT FWLGQYSTDA 
LAAISFAFPM VFLLISLGMG ISVAGSVLVA QYTGAGEARE AEYAASQTVT FAVIASVVLG
GVGYFFVGEF LELMGASADV LPLAASYMEV ISLGLVAMFG FAVFIALMRG YGDTITPMLV
MFGSVVLNIA LDPFLIFGWG PFPALGIEGA AIATVFSRAL ALVVGLAIMF RGVRGVRINV
ADMVPDASYL RRLLRIGLPA SIEGTGRAVS MNLLLFIVAL FPDPVVAAYG IGTRVFSVIF
LPAIAVARGV ETMTGQNIGS DKPDRAERAA NLAAKTLFAV LSVAGVAVFL VPEPIVSVFV
GADQADAGRV VAVGSQFLRI VALTFGFIGI MRAYTGSFRG AGKTLTAAAI SVLMLGVVRF
PIAWVAAGRI GETGIWLSFA VSNVIGAVVA YAWYRRGTWR SGDLTDRSAA GDVDEPVVAA
ESTDD