| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hlac_2215 |
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| Symbol | |
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| ID | 7401150 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Halorubrum lacusprofundi ATCC 49239 |
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| Kingdom | Archaea |
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| Replicon accession | NC_012029 |
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| Strand | - |
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| Start bp | 2199827 |
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| End bp | 2200933 |
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| Gene Length | 1107 bp |
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| Protein Length | 368 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 643709287 |
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| Product | NMD3 family protein |
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| Protein accession | YP_002566862 |
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| Protein GI | 222480625 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1499] NMD protein affecting ribosome stability and mRNA decay |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 0.208513 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCGAGT CGCGAGAGTT CTGTCCCCGG TGTGGCGACA CCGTCCCGGA GCGGCGCGAG
CCGCTTCCCG GCGACCCCGG CGGACGGGAC GCGCTGCTGT GTGACGACTG CTACTTCGAG
GACTTCGAGC TGGTCGACGC GCCCGACCGG ATCGAGGTGC TGGTCTGTTC CGGCTGCGGC
GCGGTCCGCC GCGGCGAGTC GTGGCGGGAC GTGGGTGCAC GCGACTACAC CGACGTCGCC
GTCGACGAGG TCGCGGAGGC GCTCGGGGTC CACGTCGACG CCGAAGACGT CGAGTGGGGC
GTCGAGCCCG AGCAGGTCGA CGAGAACAAC GTCCGGATGC ACTGCCGCTT CTCGGGGATC
GTCCGCGGGA CGCTCCGCTC CGCGGAGGTG ACGGTCCCCG TGAAGATCTC ACGAGGGACC
TGCGACCGCT GCGGTCGGAT CGCCGGCGGC TACTACGCCG GGATCGTGCA GGTGCGCGCG
GACGAACGTG ATCTGACGCC CGCGGAGCGC GCCGAGGCAC TCGACATCGC CGAGACGTAC
GTCGCCGACC AGGAGGCCGA CGGCGACCGC GAGGCGTTCA TCACGGAGGT CAAAGAGACC
GACGACGGGC CGGACATCAA GCTCTCCTCG AACCGGCTCG CGCAGAACGT CGCGACGCGG
ATCACGGAGG CGCTCGGCGG GAGCTTCGAG TCGTACCCGA CGCTCGTCAC CGAGGACGGC
GACGGCAACG AGGTGTACCG GGTGACCTTT GCGGTCCGGC TCCCGCGCTA CGCCGCGGGC
GAGGTCATCG ACCCCGAGGA CGGCGACGGC CCCGTGCTCG TCACGAGCGT CTCCGGCCGG
CTTCGGGGCG TCCGCCTCGT CACGGGTGCG GAGTACACCT CCGAGTTCGA GGACGCAGCG
GCCCCCGACG CGACCCGGCT CGGGCGCCGG GACGACGCCG CGGAGACGAC CGTGGTGACG
GTGGAAGACG AGAACGCGAT CCAGGTGCTC GACCCGGTCA CCTACGAGGC GAAGACGGTC
CCGAACCCGG ACTTCGTCGA CGGCGACGCC GACTCGGTGC TCGCGTTCGA ACACGGCGGA
AAGGTCCACC TCGTCCCCGA AGAGTAG
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| Protein sequence | MSESREFCPR CGDTVPERRE PLPGDPGGRD ALLCDDCYFE DFELVDAPDR IEVLVCSGCG
AVRRGESWRD VGARDYTDVA VDEVAEALGV HVDAEDVEWG VEPEQVDENN VRMHCRFSGI
VRGTLRSAEV TVPVKISRGT CDRCGRIAGG YYAGIVQVRA DERDLTPAER AEALDIAETY
VADQEADGDR EAFITEVKET DDGPDIKLSS NRLAQNVATR ITEALGGSFE SYPTLVTEDG
DGNEVYRVTF AVRLPRYAAG EVIDPEDGDG PVLVTSVSGR LRGVRLVTGA EYTSEFEDAA
APDATRLGRR DDAAETTVVT VEDENAIQVL DPVTYEAKTV PNPDFVDGDA DSVLAFEHGG
KVHLVPEE
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