| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hlac_2070 |
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| Symbol | |
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| ID | 7400590 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Halorubrum lacusprofundi ATCC 49239 |
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| Kingdom | Archaea |
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| Replicon accession | NC_012029 |
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| Strand | + |
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| Start bp | 2059214 |
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| End bp | 2060416 |
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| Gene Length | 1203 bp |
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| Protein Length | 400 aa |
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| Translation table | 11 |
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| GC content | 73% |
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| IMG OID | 643709141 |
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| Product | tRNA splicing endonuclease |
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| Protein accession | YP_002566718 |
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| Protein GI | 222480481 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1676] tRNA splicing endonuclease |
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| TIGRFAM ID | [TIGR00324] tRNA intron endonuclease |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.0810012 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGATATGC AACCGACAGG GCACCTGCGC GGCGACGCGG TCCACGTCGC CGGCGACGCC
CGCCAGCGGT TCCACGACTC CAACGGCTAC GGCCGTCCGC TCGGCGGCAA CGAGATCGCG
CTCTCGCGGG TCGAGACCGC TCACCTGCTG TTCCGGGGCG ACCTCTCGGG AGTCTCCCTC
ACCCCCGACG CCGACCCCGT CGGCTTCGAG CGCTTCTTCG TCGAGTCCGC GGCCGCCGCC
GACCGCTTCG CGGTACGCTA CCTCGTTTAC GCCGACCTGC GCGACCGCGG CTTCTACCTC
TCGCCCGCCC GCGAGCCGTG GCCCGGCGGC GACGTCGACG CGCCCGACGC GGTCGACTTC
GTCGCCTACG AGCGCGGTTC GACGCCCGAC ACGGGGGACG TGAAGTACCC CGTACAGGTC
GTCGGCGAGC GCGAGTCGCT GCCGGCGGCC GGGCTCGCGG GACGCACCCT CGCCGTCGTC
GACGAGGAGT CCGACATCAC GTACTTCGCG GCGACGCGCG GGGAGATCGC GGGTGCGACC
GACTACGAGC CCCCGGACCA GCTCGACGGC GTCCTGCTCT CCGACCGCGT CGTCGTCTGG
GACGCCCCCG AAGGGCTCTA CGAGCGCGGC TTCTACGGCC AGCCGCTCAC CGGCCGCGCC
GCGGCGGTCG AGGGCGCGGT CCAGCTATCC TTAGTCGAGG CCGCGTCGCT CGCCGCCGAC
GGCGTCCTCT CGCTGTCGAC GTCGGTGGGG ACGGCGGGCG AATCCCCCAG CGAGGGCGCC
GCAGAGACGG ACGGTCCCGT CGCCGCAGTC GTCGCCCGCG GCCGCGACGT GGAGGGCGAG
CGGTTCGACC GCCGGCTCGC CGTTTATAAG CGCCTCCGCG CGGCCGACGC CGTGCCGAAG
ACCGGCTTCA AGTTCGGCGC AGACTTCCGG ACGTACCTCG ACGTGGAGAC GGTCGAGGAC
CTGCCGCACT CCGAGCACCT CGTGCGCGTC GTCGAGGGCG ACCACCGATT CTCCCCGCGC
GAGCTCTCGC TCGACGTGCG GCTCGCGGGC GGCGTCCGCA AGGAGATGGT GTTCGCGCTG
ACGATGGTGG AGGGTGACGG TAGCGGCGCC GGTGGCGACG GCGGCGACGA CGAGACCGCC
GAGAACGGCG CGGTCCGCGA CGCCGACGTG GAGTGGCTCT CGATCGGGCG ACTGACGCCC
TGA
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| Protein sequence | MDMQPTGHLR GDAVHVAGDA RQRFHDSNGY GRPLGGNEIA LSRVETAHLL FRGDLSGVSL
TPDADPVGFE RFFVESAAAA DRFAVRYLVY ADLRDRGFYL SPAREPWPGG DVDAPDAVDF
VAYERGSTPD TGDVKYPVQV VGERESLPAA GLAGRTLAVV DEESDITYFA ATRGEIAGAT
DYEPPDQLDG VLLSDRVVVW DAPEGLYERG FYGQPLTGRA AAVEGAVQLS LVEAASLAAD
GVLSLSTSVG TAGESPSEGA AETDGPVAAV VARGRDVEGE RFDRRLAVYK RLRAADAVPK
TGFKFGADFR TYLDVETVED LPHSEHLVRV VEGDHRFSPR ELSLDVRLAG GVRKEMVFAL
TMVEGDGSGA GGDGGDDETA ENGAVRDADV EWLSIGRLTP
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