Gene Hlac_2011 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHlac_2011 
Symbol 
ID7402030 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameHalorubrum lacusprofundi ATCC 49239 
KingdomArchaea 
Replicon accessionNC_012029 
Strand
Start bp2004708 
End bp2005931 
Gene Length1224 bp 
Protein Length407 aa 
Translation table11 
GC content66% 
IMG OID643709082 
Productproteasome-activating nucleotidase 
Protein accessionYP_002566659 
Protein GI222480422 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG1222] ATP-dependent 26S proteasome regulatory subunit 
TIGRFAM ID[TIGR01242] 26S proteasome subunit P45 family 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.705003 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones24 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCTCATA GCCCCTCACT GCCCGACCGT CCTCGTCTGG AACTCGATCC GGAGATGAGC 
GAGACGGAGC GGCTCGAGGC GATCCGCCAG CACTACCGGC GGATACTGCA GGTGAACGAT
GAGCTCGAGG ACCGACTTGA TGACGCGCAG GACCGGCGCG GCGAACTCAA GTCGGACGTG
GACGGGCTGA AACGCGAAAA CGAGGTGCTG AAGACCACCT CGCTGTACAT CGCCTCCGTC
GAGGAGATCA CCGATGACGG AGTAGTCATC AAACAGCACG GCAACAACCA GGAGGTGCTG
ACGCAGGCGT CCACGACGCT TGAGTCCGAC CTCCGGCCCG GCGACCGCGT CGCGAACAAC
GATTCCTTCG CGGTCCAGCA GGTGCTCGAC GACGAGACCG ACTCCCGGGC GCAGGCGATG
GAGGTCACCG AGTCCCCGGA CGTCACCTAC GACGACATCG GCGGCATCGA CGACCAGATC
CGCGAGGTCC GCGAGGCCGT CGAGGACCCG CTCGAAGACC CCGAGCAGTT CGAGGCGGTC
GGCGTCGATC CGCCGAGCGG TGTCCTCCTG CACGGCCCGC CGGGGACTGG GAAGACGATG
CTGGCGAAGG CGGTCGCCAA CGAGTCCGAC GCCACCTTCA TCAAGATGGC CGGCTCCGAA
CTGGTCAGGA AGTTCATCGG CGAGGGCGCC CGACTCGTCC GTGACCTGTT CGAGCTCGCT
GGCGAACGCG AGCCCGCTGT CATCTTCATC GACGAGATTG ACGCCGTCGC CGCCAAGCGG
ACGGACTCGA AGACGTCGGG CGACGCCGAG GTTCAGCGCA CGATGATGCA GTTGCTCTCC
GAGATGGACG GCTTTGACGA CCGCGGCGAG GTCCGGATCA TGGCCGCCAC GAACCGCTTC
GACATGCTCG ACGAGGCGAT CTTGCGTCCG GGGCGCTTTG ACCGCCTCAT CGAGGTGCCG
GAGCCGAACG CCGAGGGTCG CGCGCGCATT TTGGAGATCC ACACGCAGGA CATGAACGTC
GCCGAAGGGA CGGACGTGAG CGAGGTCGCG GCCGACCTAG AGGGATACAG CGGCGCCGAC
ATCGCCTCGC TGGCGACCGA GGCCGGGATG TTCGCGATCC GCGACGGTCG CACCGAGGTC
ACGCAAGCGG ACTTCGAGCA GGCGCGCGAG AAGTTGCAGG ACGCCGAGAA GACCGAAGAG
CAGGTCATCA ACTACCAGTA CTAG
 
Protein sequence
MSHSPSLPDR PRLELDPEMS ETERLEAIRQ HYRRILQVND ELEDRLDDAQ DRRGELKSDV 
DGLKRENEVL KTTSLYIASV EEITDDGVVI KQHGNNQEVL TQASTTLESD LRPGDRVANN
DSFAVQQVLD DETDSRAQAM EVTESPDVTY DDIGGIDDQI REVREAVEDP LEDPEQFEAV
GVDPPSGVLL HGPPGTGKTM LAKAVANESD ATFIKMAGSE LVRKFIGEGA RLVRDLFELA
GEREPAVIFI DEIDAVAAKR TDSKTSGDAE VQRTMMQLLS EMDGFDDRGE VRIMAATNRF
DMLDEAILRP GRFDRLIEVP EPNAEGRARI LEIHTQDMNV AEGTDVSEVA ADLEGYSGAD
IASLATEAGM FAIRDGRTEV TQADFEQARE KLQDAEKTEE QVINYQY