Gene Hlac_1992 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHlac_1992 
Symbol 
ID7402011 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameHalorubrum lacusprofundi ATCC 49239 
KingdomArchaea 
Replicon accessionNC_012029 
Strand+ 
Start bp1986679 
End bp1987314 
Gene Length636 bp 
Protein Length211 aa 
Translation table11 
GC content66% 
IMG OID643709063 
Producthypothetical protein 
Protein accessionYP_002566640 
Protein GI222480403 
COG category[L] Replication, recombination and repair 
COG ID[COG1573] Uracil-DNA glycosylase 
TIGRFAM ID[TIGR00758] uracil-DNA glycosylase, family 4 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value0.770462 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value0.123925 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGGACGCGA ACCAGAAAGA GCTCCGGAAC CCGTTCGGGA TGGACACTGA CTGTGAGAAC 
TGTCCCGAGC TGTGCGGCCC CCGCGACCGG GTCGTTCACG GTTACGGCGA CGTGGGTGGT 
GAGTTTCTCG TCGTCGGTAC GCGGCCGAGT GCGACCGCCG AGGCCAACGG TATCCCCTTC 
ACCGGTGCGG GCGCCGGGGA GCGAGTGCAG TCGATCTTCG CCGACCTCGG GTTCGTCCGG 
TCGGCGCCGG ACGCGACGGA GCCCGACGTG CAGAACATCT TCTTTACGAA CCTAACGCGG 
TGTCGCCACC CCAAGCGCGA GCCGACCGAC CGAGAGGTCG AGACCTGCGA GCCGTTCCTC 
AACGCGGAGA TTCGGATGAT TAATCCGCAG ATCATCGTCC CCGTGGGCGA GCGACCGCTC 
CGCGAGCTCG CGGTCGCGTA CACCACCCGG CGTCCGGACT CCTTCGATAT CGACGCCGAA 
CACGCGACGA CGATCCGGGG CCGCGGCTTC GAGCTGGTGC CGATGAAGGA GCCGTCAGAG 
ATGACCGACA CCGAGGCCGA CGCGTTCCGG GAACACATGC GCGAGAACGT GTTGAGTCGG 
GATTACCGGC AGACGAAGGG ACGACAGAGT CGCTGA
 
Protein sequence
MDANQKELRN PFGMDTDCEN CPELCGPRDR VVHGYGDVGG EFLVVGTRPS ATAEANGIPF 
TGAGAGERVQ SIFADLGFVR SAPDATEPDV QNIFFTNLTR CRHPKREPTD REVETCEPFL 
NAEIRMINPQ IIVPVGERPL RELAVAYTTR RPDSFDIDAE HATTIRGRGF ELVPMKEPSE 
MTDTEADAFR EHMRENVLSR DYRQTKGRQS R