Gene Hlac_1977 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHlac_1977 
Symbol 
ID7399929 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameHalorubrum lacusprofundi ATCC 49239 
KingdomArchaea 
Replicon accessionNC_012029 
Strand- 
Start bp1974077 
End bp1974784 
Gene Length708 bp 
Protein Length235 aa 
Translation table11 
GC content67% 
IMG OID643709048 
Producthypothetical protein 
Protein accessionYP_002566625 
Protein GI222480388 
COG category[S] Function unknown 
COG ID[COG5530] Predicted integral membrane protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value0.833289 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value0.194869 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCGGACC CGTCCGCGGA CTTCGATCCC GAATCGCGCG AGGAGCGCGA GGTCGCCGCG 
GAAGCCGCAG GGGACCGGTC AGAGCTACTC TCGCTTATGG CCCACACCTA CCGCGGGGAG 
CTCGGACGGG CAGCCTCGTG GCGCACGCGC ATCGACCGAA CCACGAACTG GGCGGTGGTG 
CTGACGGCGT CGCTGCTCAC GTGGACGTTC TCGAACGAAT CGCGCCCGCA CTACGTGCTG 
CTCATCGGGC TCGTAATGCT CACCGTCTTC CTCAGCATCG AGGCCCGGCG GTACCGAATA 
TACGACGTGT GGCGGTCCCG TGTTCGGATC TTGGAGGAGA ACGTGTTCGC GAACGCGCTC 
GACCCCGAGG GCGTCGAGCA GTCGAACTGG CGGGGGCTCC TGAGCACCGA CCTCCGCAAG 
CCGACGATCA AGACGCCGGC CGTCGAGGCG GTCTCTCGTC GGCTCCGACG GGTGTACACC 
CCGCTCTTCA CCGTCCTCAT CGCGGCGTGG ATTGTCCGCC TCACGGTGTT CACACCGCCG 
GAGAGCGGCG TCGTTGCCAC CGCGTCCGTC GGCGCGATTC CGGGACTGAT CATTCTGGCT 
GGCGTCGCCT GTTTTTATAT CGTCGTGCTC GGGCTCTCCC TCCGAACGCG TCCGCGGCAG 
GCGAAGGGAG AACTGCAGTC GACCGACCGC TCCGAGGAGT GGAAGTGA
 
Protein sequence
MSDPSADFDP ESREEREVAA EAAGDRSELL SLMAHTYRGE LGRAASWRTR IDRTTNWAVV 
LTASLLTWTF SNESRPHYVL LIGLVMLTVF LSIEARRYRI YDVWRSRVRI LEENVFANAL 
DPEGVEQSNW RGLLSTDLRK PTIKTPAVEA VSRRLRRVYT PLFTVLIAAW IVRLTVFTPP 
ESGVVATASV GAIPGLIILA GVACFYIVVL GLSLRTRPRQ AKGELQSTDR SEEWK