| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hlac_1968 |
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| Symbol | |
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| ID | 7399920 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Halorubrum lacusprofundi ATCC 49239 |
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| Kingdom | Archaea |
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| Replicon accession | NC_012029 |
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| Strand | - |
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| Start bp | 1966550 |
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| End bp | 1968184 |
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| Gene Length | 1635 bp |
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| Protein Length | 544 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 643709039 |
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| Product | TrkA-N domain protein |
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| Protein accession | YP_002566616 |
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| Protein GI | 222480379 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG0569] K+ transport systems, NAD-binding component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.0623944 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGACTCGT GGAAGCGGCG GGTCGGGGGG TACTCCGCCT TCGTCCTCTT CGTGCTGATT
TTCACCGCGG TCGTCTATCG CTACGGGATG CGGGTGTACG AGGGGGATCC GCGCACGATG
ATCGAGGCGC TGCGCTTCTC GATCGAGATG TTCACGACCA CCGGATTCGG CGGAGATTCG
CCGTGGGAGA GCCAGCAGCT AAACGCGTTC ATCGCGGTGA TGGACCTCGT CGGCATGGTG
CTTCTGATCG GCGCGCTGCC GGTCGTGGTG ACGCCCCTCC TAGAGGAAGC CTTCTCGACG
ACCGTCCCCC GGTCGCTGGA TGAGGACCTG TCCGGCCACG TCGTCGTCTG TTCGGACACC
TCGCGGTCGG CGGCGCTCAT CGAGGAGTTC GACTCCCACG AGATCCCCTA CGCGATCGTC
GAACCGGACG CCGACCGGGC GGTGCGTCTC TACGAGGCGG GCCGGACAGT GATCCGCGCG
GATCCGGAGT CGACGGAGGG GTTGGCGGCC GCGAACCTGC CCGACGCGCG GGCGCTGGTG
ACGGATGTCT CCGACCAGGT CGACGCGAGT ATCGTGCTCG CCGCCAAAGA GCTGTCGCCG
GAGGTGCGCG TTATCAGCGT CGTCGAGGAC CCGGAACGCG AGCGGTACCA CCGGCTCGCC
GGCGCTGACG AGGTCCTCTC GCCGCGGTCG CTACTCGGCG AGAGCCTCGC CGCGAAGGTG
ACGACCGCGC TGCAGACAGA CCTCGGCGAG GCGGTCGCGA TCGGCGACTC CCTCCAACTC
GCGGAGGTGT CGGTCCCGCA CGGGAGCTCG CTCGCCGGCT CGACGCTGGC CGAGAGCAGG
ATCGGCGAAC GCGCCGGCGT CAACGTGATC GGCGCGTGGT TTAACGGCGA GTTTGACGCG
GCGCCGCCGC CGAACGCGAC GCTGTCGGCC GGGACAGTCC TGCTCGTCTC CGGTCGGTCG
GATCAGCTGG AGCGGCTCGT CGAGCTGACG AACTCCGCCA CGCGACGGTT CGGCGCGGGC
GAGACCGTGG TCATCGGGTA CGGACAGGTC GGCCGAACCG TTGCCGAGGC GGTCGCAGAC
GCCGACCTGC CCGTCACGGT CGTCGACCGA GAGGACGCCG AGGGCGTCGA CGTAGTCGGC
GACGCGACCG ATCCGGAGAC GCTGCGCGCC GCCGGCGTCG AGGCGGCACA GACGGTCGTA
CTCGCGCTAC CGGACGACAC CACGACGGAG TTTACGACAC TCGTGGTTCG CGATCTGGCG
CCGAACACGC AGGTGCTCGC CCGCGTCGAG GAAGCCGCGA GCGTCCGGAA GATGCACCGG
GCAGGCGCCG ACTACGTGCT CTCCCTTGCG ACCGTCACCG GACGGATGTC CGCCTCGACC
GTCATCGAGG GTCGCGACGT GCTCTCGCTC AACCAGCAGA TTGAGGTCGT CAGAAGCCGC
GTACCGCGGC TTACCGGACG GACGATCGGC CGGGCGAACG TCCGCGAGGC GACCGGCTGT
ACCGTCATCG CGATCGAGCG AGACGACGAG ACCGTGACCG AAATCGGCCC CGACACGCGG
ATCGAGCCGG ACGACGAGCT CGTCGTCGTC GGCACCGACG AGGGGATTCG GGCGTTCGAA
GGCCGATTCA CCTGA
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| Protein sequence | MDSWKRRVGG YSAFVLFVLI FTAVVYRYGM RVYEGDPRTM IEALRFSIEM FTTTGFGGDS
PWESQQLNAF IAVMDLVGMV LLIGALPVVV TPLLEEAFST TVPRSLDEDL SGHVVVCSDT
SRSAALIEEF DSHEIPYAIV EPDADRAVRL YEAGRTVIRA DPESTEGLAA ANLPDARALV
TDVSDQVDAS IVLAAKELSP EVRVISVVED PERERYHRLA GADEVLSPRS LLGESLAAKV
TTALQTDLGE AVAIGDSLQL AEVSVPHGSS LAGSTLAESR IGERAGVNVI GAWFNGEFDA
APPPNATLSA GTVLLVSGRS DQLERLVELT NSATRRFGAG ETVVIGYGQV GRTVAEAVAD
ADLPVTVVDR EDAEGVDVVG DATDPETLRA AGVEAAQTVV LALPDDTTTE FTTLVVRDLA
PNTQVLARVE EAASVRKMHR AGADYVLSLA TVTGRMSAST VIEGRDVLSL NQQIEVVRSR
VPRLTGRTIG RANVREATGC TVIAIERDDE TVTEIGPDTR IEPDDELVVV GTDEGIRAFE
GRFT
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