Gene Hlac_1890 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHlac_1890 
Symbol 
ID7400084 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameHalorubrum lacusprofundi ATCC 49239 
KingdomArchaea 
Replicon accessionNC_012029 
Strand
Start bp1891029 
End bp1891922 
Gene Length894 bp 
Protein Length297 aa 
Translation table11 
GC content69% 
IMG OID643708961 
ProductUspA domain protein 
Protein accessionYP_002566538 
Protein GI222480301 
COG category[T] Signal transduction mechanisms 
COG ID[COG0589] Universal stress protein UspA and related nucleotide-binding proteins 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.108778 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones22 
Fosmid unclonability p-value0.382663 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTTCGATC GCATCCTGTT CCCGACCGAC GGCAGCGACG GGGCGAGCGC CGCGTTCGAT 
CACGTCCTCG ATATCGCGGC CGATCACGGC GCGACCGTCC ACGTTCTCAA CGTCGCCGAC
ACGACCCACG ACAGCGTCAC ACGGATCGAC GGCGAGATTG TCGACGTACT CGAACGCGAG
GGCGAGGAGA TCGTCGAGGC GGTCGCGGAC CGCGCTGCCG ACCGGGGAAT CGAGACGGTG
ACCAAGGTGC TTCAGGGCGG CGTCGCCGAG ACAATCGCCA CGTACGCCGG GGAGCACGAG
ATGGACCTCG TCGCCATGCC GACTCGCGGT CGAACGGGAT TCGACCGCCT GCTCCTCGGG
AGCACCACCG AGCGCGTCGT CCGAGAATCG ACGGTGCCGG TGCTCAGTAT CCGACCGGAC
GGAGAGACGG CGCGGTACCC CTACCGGAAC GTTCTCGTGC CCACCGACGG GAGCGAGCGC
GCCGCCGACG CCCTCGACCG GGCGCTGACG CTCGCCAAGC GCGCGGACGC GACGGTCCAC
GTCCTCACCG TCGTCGACGT CGCGACCGTC GGGGGCGAGG GGTACTCGGG CGTGGACGCG
CTGGTGGAGG GTGCCGAGGA GACGGTCATG GAAGCGGCGG CGACCGCCGA GGAAGCGGGT
GTCGATTCGG TCGAGGCAGT CGAGGTCGGG TCGTCTGCAA CGCGCGGGAT CCAGTCGTAC
ATCGACGAGA ACGACATTGA TCTGGTCGTC ATGGGGACGC AGGGACGAAC CGGAGTCAAG
CGGTACCTCC TCGGGAGCGT CGCCGAGCGC ACCGTCCGCA CGTCTCCGGT ACCGGTGTTG
ACGGTTTCCG ACCCGGGCGA CGAGGCGGGT GACGAAACGG GCGACGAAGA CTGA
 
Protein sequence
MFDRILFPTD GSDGASAAFD HVLDIAADHG ATVHVLNVAD TTHDSVTRID GEIVDVLERE 
GEEIVEAVAD RAADRGIETV TKVLQGGVAE TIATYAGEHE MDLVAMPTRG RTGFDRLLLG
STTERVVRES TVPVLSIRPD GETARYPYRN VLVPTDGSER AADALDRALT LAKRADATVH
VLTVVDVATV GGEGYSGVDA LVEGAEETVM EAAATAEEAG VDSVEAVEVG SSATRGIQSY
IDENDIDLVV MGTQGRTGVK RYLLGSVAER TVRTSPVPVL TVSDPGDEAG DETGDED