| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hlac_1876 |
|---|
| Symbol | |
|---|
| ID | 7400069 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Halorubrum lacusprofundi ATCC 49239 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_012029 |
|---|
| Strand | - |
|---|
| Start bp | 1880586 |
|---|
| End bp | 1881479 |
|---|
| Gene Length | 894 bp |
|---|
| Protein Length | 297 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 643708946 |
|---|
| Product | shikimate kinase |
|---|
| Protein accession | YP_002566524 |
|---|
| Protein GI | 222480287 |
|---|
| COG category | [E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG1685] Archaeal shikimate kinase |
|---|
| TIGRFAM ID | [TIGR01920] shikimate kinase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.537362 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 0.0669761 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAGGGAC GGGCAGCGGC GCTCGGCGCC GGCACCGTGT TGAACGCGCT CGCGACGGGC
ACCGGCGCCG CCTTCGGCAT CGACGTCGAG ACCCGCGCGA CGGTGACGCT CAACCCGGAC
GCCGACGGCG TGCGCGGGAC GATCGCCGAG GACCCCGACG GTGACACCGC CCTGATCGAG
CACTGCGTCG CGCTCGCGAC CGAGCGCTGG GGCGACGGCG AGGGCGGCAC CGTCCGGACC
GACAGCGACG TGCCCCTCGC AGCGGGACTC AAAAGCTCCA GCGCGGCCGC CAATGCGACC
GTGCTCGCGA CCTGTGACGC GCTCGGGCTG GCGGTTGGAG ACGACGATGC GGACCCGTCC
GTCGACGTCA CCCGCCTCGA CGCCTGCCGA CTCGGGGTCC GAGCGGCCCG CGAGGCGGGC
GTCACGGTCA CGGGCGCGTT CGACGACGCG ACCGCTTCGA TGCTCGGCGG CGTCACCGTT
ACCGACAACG ACGCCGACGA GCTACGGTCG CGCGAGACCG TCGACTGGGA CGTTCTCGTG
TGGACGCCTC CCGAGCGCGC CTACAGCGCG GACGCGGATG TGACCCGCTG TGAGGCCGTC
GCGCCGATGG CGGATCTCGT CGCCGACCTC GCGCTCGACG GCCGGTACGC CGAGGCGATG
ACCGTTAACG GACTCGCGTT CTCCGCCGCG CTCGGCTTCG ACGCCGACCC CGCGGTCGAG
GCGATGCCCC ACGCCACCGG AGTGTCGCTG TCGGGGACCG GTCCGAGCGT CGTCGCCGTC
GCGGACCCCG ACGACCCCGA GACCGACCTC GACGCGGTCG CCGACGCGTG GAGCAACCGT
CCCGGAACCC TGCGGCGAAC GACCACCAGA AACGACGGTG CGGCCGTCGA GTGA
|
|---|
| Protein sequence | MEGRAAALGA GTVLNALATG TGAAFGIDVE TRATVTLNPD ADGVRGTIAE DPDGDTALIE
HCVALATERW GDGEGGTVRT DSDVPLAAGL KSSSAAANAT VLATCDALGL AVGDDDADPS
VDVTRLDACR LGVRAAREAG VTVTGAFDDA TASMLGGVTV TDNDADELRS RETVDWDVLV
WTPPERAYSA DADVTRCEAV APMADLVADL ALDGRYAEAM TVNGLAFSAA LGFDADPAVE
AMPHATGVSL SGTGPSVVAV ADPDDPETDL DAVADAWSNR PGTLRRTTTR NDGAAVE
|
|---|
| |