| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hlac_1869 |
|---|
| Symbol | |
|---|
| ID | 7400062 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Halorubrum lacusprofundi ATCC 49239 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_012029 |
|---|
| Strand | - |
|---|
| Start bp | 1875117 |
|---|
| End bp | 1877342 |
|---|
| Gene Length | 2226 bp |
|---|
| Protein Length | 741 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 643708939 |
|---|
| Product | copper-translocating P-type ATPase |
|---|
| Protein accession | YP_002566517 |
|---|
| Protein GI | 222480280 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG2217] Cation transport ATPase |
|---|
| TIGRFAM ID | [TIGR01494] ATPase, P-type (transporting), HAD superfamily, subfamily IC
[TIGR01511] copper-(or silver)-translocating P-type ATPase
[TIGR01525] heavy metal translocating P-type ATPase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.0327239 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACGACG ACCACGCGGC GCATCATCAG CACGCCCCCG CCGAGCGCCC CACCGATCGA
GCGTGCCCTG GGTGTCGGGT CTGCGCGTGC TACGAGACCG AAAGCGACCG CCGCGCGACG
GACGAAACCG ATGATCGCGC CGAATCCCCC GATTACAACC ATCACGCCGG CCACAGTCAG
AACGACCACG GCAGCGCAGA CCACGACCAC GGTTCAATGG TCGACCACTC GGGGCACGAG
GCGATGTTCA GACGACGGTT CTTCGTGTGT CTCGCCCTTG CAGTGCCCGT CCTCTACTAC
AGCACTACGT TACAGTCGTG GCTCGGCTTC GCCGCAATAG GCTTCACTGG GAGCGAATTC
ATCGCGCCCG CCTTCGGGCT CCTCGTATTC GGGTACGGGG GCGTACCGTT CCTCCGGATG
GGGGCCGTCG AGGCTCACAA CCGGGAGCCA GGGATGATGC TACTGATCTC GCTGGCGATT
ACTGTCGCGT TCGTCTACAG CATCGGGGCC GTGGCGTTCG GGGTCGGCGA GCCGTTCTTC
TGGGAACTCG TCACACTCAT CGTCATCTTC CTGCTCGGCC ACTGGGTCGA GATGCGGAGC
GTCCGCCGTG CATCGGGAGC ACTCGACCAC CTCGCCGACC TGATGCCAGA CACCGCCGAA
CGGCTCACAG ACGGTGGTGA GCCGGAGACG GTTCCGGTCG CCGAACTTCA GCAGGATGAC
CTCGTACTTG TTCGCCCCGG GGCGAACGTG CCAGCCGACG GCGTCGTCGA GGAAGGGGAG
TCGAACGTCA ACGAGTCGAT GCTCACCGGC GAGTCCAAAC CCGTCTCGAA GGAGCCCGGT
GACGAGGTCA TCGGCGGGAC GACAAACCGA GACGGAAGCC TTCGCGTCCG GGTGACCGCA
ACCGGCGACG CGACTGCTCT CTCGGGCATC ATGCGGCTGG TCGATGAGGC CCAGCGGAGT
AAGTCCCGGA CGCAGGTGCT CGCCGATCGG GCCGCCGGCT GGCTGTTCTA CGCGGCGCTC
ACGGTGGCGA CTGTCACCGC CGTCGCGTGG ACGGCTGCGG TCGGGTTCGG ATTCCCGGTG
GTTGAACGCG TCGTGACAGT GCTGGTTATC GCCTGTCCGC ACGCGCTCGG ACTCGCTGTG
CCGCTCGTCG TCGCCATCAA CACATCGATG GCGGCCAGCA ACGGGATGCT TATCCGCGAT
CGCATAGCGA TGGAGGAGGC CCGTAACCTC GACGTGGTCG TCTTCGACAA GACCGGGACG
CTGACGAAGG GCGAGCAGGG GATCGTCGAT GTAACTACGA CCGGGACGCT GACCGAGAAC
GAGGCGCTGA CGCTGATGGC CGCCGTCGAG ACCGACTCCG AGCATATGAT TGGCGAGGCG
ATTCTGTCCG AGGTCGAAGA ACGTGGCCTC ACCGTCCCGG ACGCAACTGG GTTCGAGGCG
CTTGAGGGCC GTGGCGTCCG GGCGACAGTC GACACGACCG CCGTCACCTC GGGAACGGGT
GAGACCAAAC GAGAGTCGGT TCACGTCGGT GGCCCGAACC TGATCCGGCA CCTGGGCGTC
GAGATACCGG GAGAAATCGA CGCGTTCGCG GAGCGCGCTG GCTCTCGGGG ACAGGGTGTC
GTCTACCTCC TCCGCGAAGA GGAGGCGGTA GCTGCGGTGG CACTCGCGGA CGTGGTTCGA
GAGGAGAGCT TTGAGGCTAT CGAGGCACTC CATCAGATGG GTGTCGAGGT GGCGATGTTA
ACCGGTGACT CCGAAGACGT CGCCCGGGCC GTCTCGGAAG AACTCGGCAT CGACACGTAC
TTCGCCGAGG TGTTGCCCGC GGATAAGGAC GAGAAGATTG TTGAGTTACA GGAGGGCGGA
ACCCTCGTCG CGATGGTCGG GGACGGCGTG AACGACGCGC CCGCGTTAAC CCGTGCGGAC
GTCGGCATTG CCATCGGGTC GGGTACCGAC GTGGCTGTTG AGTCGGCTGA CGTTGTCCTC
GTGGAGAACG ACCCGCGGGA CGTGGCCAGC CTCGTCCGCC TCAGTCGGAA GAGCTACCGG
AAGATGCAGG AGAACATCGT CTGGGCAGCC GGGTACAACG TCATCGCACT CCCGCTCGCC
GCTGGCCTAC TCGCACCCAT CGGTGTCCTG CTTTCGCCCG CCGTCGGGGC TGTTTTGATG
TCCGCGAGCA CGATAGTCGT CGCGGTCAAC GCCCAGCTCC TGCGTCGGGC CGATATCTCG
AATTGA
|
|---|
| Protein sequence | MDDDHAAHHQ HAPAERPTDR ACPGCRVCAC YETESDRRAT DETDDRAESP DYNHHAGHSQ
NDHGSADHDH GSMVDHSGHE AMFRRRFFVC LALAVPVLYY STTLQSWLGF AAIGFTGSEF
IAPAFGLLVF GYGGVPFLRM GAVEAHNREP GMMLLISLAI TVAFVYSIGA VAFGVGEPFF
WELVTLIVIF LLGHWVEMRS VRRASGALDH LADLMPDTAE RLTDGGEPET VPVAELQQDD
LVLVRPGANV PADGVVEEGE SNVNESMLTG ESKPVSKEPG DEVIGGTTNR DGSLRVRVTA
TGDATALSGI MRLVDEAQRS KSRTQVLADR AAGWLFYAAL TVATVTAVAW TAAVGFGFPV
VERVVTVLVI ACPHALGLAV PLVVAINTSM AASNGMLIRD RIAMEEARNL DVVVFDKTGT
LTKGEQGIVD VTTTGTLTEN EALTLMAAVE TDSEHMIGEA ILSEVEERGL TVPDATGFEA
LEGRGVRATV DTTAVTSGTG ETKRESVHVG GPNLIRHLGV EIPGEIDAFA ERAGSRGQGV
VYLLREEEAV AAVALADVVR EESFEAIEAL HQMGVEVAML TGDSEDVARA VSEELGIDTY
FAEVLPADKD EKIVELQEGG TLVAMVGDGV NDAPALTRAD VGIAIGSGTD VAVESADVVL
VENDPRDVAS LVRLSRKSYR KMQENIVWAA GYNVIALPLA AGLLAPIGVL LSPAVGAVLM
SASTIVVAVN AQLLRRADIS N
|
|---|
| |