Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Hlac_1845 |
Symbol | ndk |
ID | 7400037 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Halorubrum lacusprofundi ATCC 49239 |
Kingdom | Archaea |
Replicon accession | NC_012029 |
Strand | + |
Start bp | 1850857 |
End bp | 1851336 |
Gene Length | 480 bp |
Protein Length | 159 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 643708914 |
Product | nucleoside diphosphate kinase |
Protein accession | YP_002566493 |
Protein GI | 222480256 |
COG category | [F] Nucleotide transport and metabolism |
COG ID | [COG0105] Nucleoside diphosphate kinase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.00368258 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 20 |
Fosmid unclonability p-value | 0.19562 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGCCACC ACGACGAGCG CACTTTCGTG ATGGTCAAGC CCGACGGCGT GCAGCGCGGC CTCATCGGCG AGATCGTCTC CCGCTTCGAG GAGCGCGGGC TGAAGCTCGT CGGCGGCAAG TTCATGCAGA TCGACGAGGA CCTCGCTCAC CAGCATTACG GTGAACACGA GGGCAAGCCG TTCTTCGACG GCCTCGTCGA CTTCATCACC TCCGCCCCCG TCTTCGCGAT GGTGTGGGAG GGCGCAGACG CGACCCGACA GGTCCGATCG ATGGTCGGCG AGACCGACCC CGCCGAGTCC GCCCCGGGCA CGATCCGCGG CGACTTCGGC TTAGACCTCG GCCAGAACGT GATCCACGCG TCGGACCACG AGGACGAGGG CGCCAACGAG CGCGAGATCG ACCTGTTCTT CGACGAGGAG GAACTCGTCG ACTACGGCCT CGACACCGCG GCGTGGGTGT ACGAGGACGA GCAGCACTGA
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Protein sequence | MSHHDERTFV MVKPDGVQRG LIGEIVSRFE ERGLKLVGGK FMQIDEDLAH QHYGEHEGKP FFDGLVDFIT SAPVFAMVWE GADATRQVRS MVGETDPAES APGTIRGDFG LDLGQNVIHA SDHEDEGANE REIDLFFDEE ELVDYGLDTA AWVYEDEQH
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