Gene Hlac_1816 details

Gene Information

• Locus tag: Hlac_1816
• Symbol: rps13p
• ID: 7399692
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Halorubrum lacusprofundi ATCC 49239
• Kingdom: Archaea
• Replicon accession: NC_012029
• Strand: +
• Start bp: 1832058
• End bp: 1832582
• Gene Length: 525 bp
• Protein Length: 174 aa
• Translation table: 11
• GC content: 63%
• IMG OID: 643708885
• Product: 30S ribosomal protein S13P
• Protein accession: YP_002566465
• Protein GI: 222480228
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0099] Ribosomal protein S13
• TIGRFAM ID: [TIGR03629] archaeal ribosomal protein S13P

Plasmid Coverage information

• Num covering plasmid clones: 22
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 32
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGAGCACGG AAGAATCACA GGACGACTCA CCGGAGGAGG AGGAAGACCT CCAGTACTTC 
GTCCGGATCG GGGGCGCTGA CCTCGACGGG ACGAAGACGG TCGAGCGAAG CCTGTCCGAA 
CTCGACGGCA TCGGCACGCG CACGGCGCGG CTGGTCGCCG AGAAGGCCGA CGTGGACCGA 
AACGCCACGT TCGGGCTCCT CGACGAGGAT GACCTCGACG CGGTGGTTGA CATCGCCGAG 
AACCTCGAAG ACCACGTCCC GTCGTGGATG ACGAACAGAC AGAACGACTT CTACTCCGGA 
GAGACGACGC ACCTCGTCGG CACCGACGTC AGCGAGAAGC GTCGCCACGA CATCAACCGG 
ATGAAGATCA TCGAATCGTA TAAAGGCGTT CGCCACAAGC GCGGCCAGAA GGTACGCGGC 
CAGCGCACGA AGTCCACGGG ACGGTCCGAG GGCACCATTG GCGTCAACGT CGAGGAGATC 
CGCGAGGAGA TGGCGGAAGA AGAAGCAGCG GGTGACGAGG AATGA 

 

Protein sequence

MSTEESQDDS PEEEEDLQYF VRIGGADLDG TKTVERSLSE LDGIGTRTAR LVAEKADVDR 
NATFGLLDED DLDAVVDIAE NLEDHVPSWM TNRQNDFYSG ETTHLVGTDV SEKRRHDINR 
MKIIESYKGV RHKRGQKVRG QRTKSTGRSE GTIGVNVEEI REEMAEEEAA GDEE