| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hlac_1739 |
|---|
| Symbol | |
|---|
| ID | 7400497 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Halorubrum lacusprofundi ATCC 49239 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_012029 |
|---|
| Strand | - |
|---|
| Start bp | 1752906 |
|---|
| End bp | 1753721 |
|---|
| Gene Length | 816 bp |
|---|
| Protein Length | 271 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 643708806 |
|---|
| Product | Xylose isomerase domain protein TIM barrel |
|---|
| Protein accession | YP_002566391 |
|---|
| Protein GI | 222480154 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1082] Sugar phosphate isomerases/epimerases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.125041 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 0.800521 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGGAGCG TACAGGCCCG TCCGGATCAG GCCAATTCCG GATCCGCGGC GGAGTCGGTT
CCGACATCCG CTCAGTTCTA TTCCTTTACC CAGTCGGGCC TCTCGACGGC GGAGCTGATC
TACGAGATGG AGGCAGCGGG CTACGACTAC TTCGAACCGT TCACGATCAG CGACGACTCG
GATGTCGACG CGATCACCGA CGCGATCGAC GAGACTGGCG TGGGGATGAG TAGTGCCCAC
CAGGGACTCG ACGAGACGCT CGACGATCCT GAGGCCGTCG CCGAACGATA CCTCCAGTAC
GGCGAACCCG CCCTCATCGA GCCGTACATC GGCCCCGACA CGTGGAGCAC CGAGTCGAGC
GTCCTCGACC TAGCCCACGA TGTCAACACG GCCGCGGACC ACATGGCCGA TCACGGACTC
GAGTTCGGTT ATCACAACCA CAATCACGAG TTCCAGCAGC TCGACGACGC CGACGAGACC
GGCTACGACG TCTTCGCGGA GGCGGTCGAA GACCACGTGC ACCTGCAGCT CGACGTCGGC
TGGGTCGAGA CCGGCGGCGC GAACCCCACC GAGTACATCA GCCGGTACAA AGACAAGATC
AGTTCCATCC ACATGAAGAA CATGGAGGAC GGTGGCTTCG TCGAGATCGA CGAGGGCGAC
GTCAACATGA AAGCCGTTGC CAACGTCGCG CGGGCGGCCG CCGACGTCGA TTACCTGATC
TACGAGTACG ACCGAGCGCC CCAGCCGATC GAGTCGATGA ACATCGGCGG CGAGTTCCTC
GGTCGGTGGA ACGGCCCGCG CCGCGGCCGT AACTGA
|
|---|
| Protein sequence | MGSVQARPDQ ANSGSAAESV PTSAQFYSFT QSGLSTAELI YEMEAAGYDY FEPFTISDDS
DVDAITDAID ETGVGMSSAH QGLDETLDDP EAVAERYLQY GEPALIEPYI GPDTWSTESS
VLDLAHDVNT AADHMADHGL EFGYHNHNHE FQQLDDADET GYDVFAEAVE DHVHLQLDVG
WVETGGANPT EYISRYKDKI SSIHMKNMED GGFVEIDEGD VNMKAVANVA RAAADVDYLI
YEYDRAPQPI ESMNIGGEFL GRWNGPRRGR N
|
|---|
| |