Gene Hlac_1523 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHlac_1523 
Symbol 
ID7401453 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameHalorubrum lacusprofundi ATCC 49239 
KingdomArchaea 
Replicon accessionNC_012029 
Strand
Start bp1540835 
End bp1541395 
Gene Length561 bp 
Protein Length186 aa 
Translation table11 
GC content60% 
IMG OID643708589 
Producttranscription factor 
Protein accessionYP_002566181 
Protein GI222479944 
COG category[K] Transcription 
COG ID[COG2101] TATA-box binding protein (TBP), component of TFIID and TFIIIB 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.302764 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value0.0166402 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACGAACC CTGCAGATTC GATCGAGATC CAGAACGTAG TTGCATCGAC GGGGATCGGC 
CAAGAGCTCG ATTTGGAGGC GCTCGCCGAG GACCTTCCGG GCGCTGATTT CAACCCCGAC
AACTTCCCGG GGCTCGTCTA CCGGACCCAG GAACCGAAGG CGGCCGCGCT CATTTTCCGG
TCAGGGAAGA TCGTCTGCAC GGGTGCGAAA AGCATCGATG ACGTTCACGA GGCGCTCGGG
ATCATCTTCG AGAAACTCCG CGGACTGCAG ATTCCCGTCG AAGAGGACCC GGAAATCACC
GTTCAGAACA TCGTCTCGAG CGCCGACCTC GGGCACAACC TTAACCTCAA CGCGCTCGCG
ATCGGGCTTG GACTCGAAGA CGTCGAGTAC GAGCCGGAGC AGTTCCCGGG TCTCGTGTAC
CGGATGGACG AACCGGAAGT CGTGATTCTC CTGTTTGGGA GTGGGAAGAT CGTCATCACC
GGTGGGAAGC GGACCGACGA CGCGGAAGAA GCCGTAGAGG AGATCGTCGA ACGGATCGAA
GGGCTCGGCC TACTAGGATA G
 
Protein sequence
MTNPADSIEI QNVVASTGIG QELDLEALAE DLPGADFNPD NFPGLVYRTQ EPKAAALIFR 
SGKIVCTGAK SIDDVHEALG IIFEKLRGLQ IPVEEDPEIT VQNIVSSADL GHNLNLNALA
IGLGLEDVEY EPEQFPGLVY RMDEPEVVIL LFGSGKIVIT GGKRTDDAEE AVEEIVERIE
GLGLLG