| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hlac_1206 |
|---|
| Symbol | |
|---|
| ID | 7399473 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Halorubrum lacusprofundi ATCC 49239 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_012029 |
|---|
| Strand | + |
|---|
| Start bp | 1214957 |
|---|
| End bp | 1216024 |
|---|
| Gene Length | 1068 bp |
|---|
| Protein Length | 355 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 643708271 |
|---|
| Product | Squalene/phytoene synthase |
|---|
| Protein accession | YP_002565870 |
|---|
| Protein GI | 222479633 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1562] Phytoene/squalene synthetase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 0 |
|---|
| Plasmid unclonability p-value | 0.0000000204086 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | unclonable |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.00000600855 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGGAC GAGCACACGG TCCCGCTGAG CCCGACCTCT CGTGGTGTCA CGAGGCGGTT
CAGGGCGTTT CTCGGACCTT CGCGCTGACG GTCGACGTGT TGGAGGAGCC GATGGCCTCG
CATATCTGCG TGGGATACCT CCTCTGTCGG GTCGCCGATA CCGTCGAGGA CGCCGGACAC
ATCCCTCCTG AAGCTCAAAG CGACGTGTTG CGGACGTACC GGCGCGCGAT CGACCCCGAC
GACGACACCG ACATTGTGGC GTTCCGCGAC GCGGTCGACG AGTGGCTCCC GGCGCCCGCC
GACCGCAACG ACGACTGGGA AGTCGTCGCC GAGGTACCGA CGATCGTGGC GACGTTCGCG
GAGTTCGAGC CCGAGGCCCG CGACGCGATC GTCCCACCCG TCTTGGAAAT GGTTGACGGG
ATGGCGATGT TCGTCGATCG GCACGCCACC GAGGGCGGGC TCCGTATCGA CGACCGCGAC
GAACTAGAGC AGTACTGCTA CTACGCTGCC GGCACGGTCG GGAACCTCAT CACGAACCTG
CTCACCCGTG GCGACGTCAC CGAGGACCGC GCGCGGCAAC TACGAGACAC AGCCGAGGAG
TTCGGACTCC TCCTCCAACT CGTGAACGTC TCGAAAGACG TGTACGACGA CTACACCGAG
GAGAACAACG TCTACCTTCC CGCCGAGTGG CTCGCCGACG AGGGGGTCGA CCAAGAGCGC
GTCGTCCACC CGGAGAATCG GGAGTCGTCC GCCCGCGTCG TCAGCCGGAC CGCCGAGTAC
GCCCGGTCGT TCCTCGACGA CGCGCAGGCG TACTTAGAGA CGATGCCGCT CTCGAACGGA
AACACGATGG AGGCGTGGAC CGTCCCGTAC CTGCTCGCGG TCGGTACCCT CCGCGAACTC
AGTTCCCGTC CCGAGGACGC GCTCACCGAA ACCGGCGTGA AAATCTCCCG CCAGGAGGTG
TTCGCGGTGA TGGCCGTCGC CGGCGACGCC GGCCGCGACT CCCTCGCAGA TCTCCGGCAG
ACGATCGCGC GGACTCCCTT CCACCGGGCC GTCGAGCCTG CGGACTGA
|
|---|
| Protein sequence | MSGRAHGPAE PDLSWCHEAV QGVSRTFALT VDVLEEPMAS HICVGYLLCR VADTVEDAGH
IPPEAQSDVL RTYRRAIDPD DDTDIVAFRD AVDEWLPAPA DRNDDWEVVA EVPTIVATFA
EFEPEARDAI VPPVLEMVDG MAMFVDRHAT EGGLRIDDRD ELEQYCYYAA GTVGNLITNL
LTRGDVTEDR ARQLRDTAEE FGLLLQLVNV SKDVYDDYTE ENNVYLPAEW LADEGVDQER
VVHPENRESS ARVVSRTAEY ARSFLDDAQA YLETMPLSNG NTMEAWTVPY LLAVGTLREL
SSRPEDALTE TGVKISRQEV FAVMAVAGDA GRDSLADLRQ TIARTPFHRA VEPAD
|
|---|
| |