| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hlac_1195 |
|---|
| Symbol | |
|---|
| ID | 7399462 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Halorubrum lacusprofundi ATCC 49239 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_012029 |
|---|
| Strand | - |
|---|
| Start bp | 1201722 |
|---|
| End bp | 1203431 |
|---|
| Gene Length | 1710 bp |
|---|
| Protein Length | 569 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 643708260 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_002565859 |
|---|
| Protein GI | 222479622 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1361] S-layer domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 0 |
|---|
| Plasmid unclonability p-value | 0.000000512165 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | unclonable |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.0000097996 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAGCCGGG CCGCGAAGAT TGGCACGCTG GTTCTCGCGT TCGTCGCGGC CGGGGCGCTC
GTCGCCGGCG TCGCGCTCTC CGGGGCCGCC GCGCCCGGAT CCGGCGACGC GCTCGATCGG
GGGCAGGCGG CGCTGGTCGG GAGCAACGCG ATCGGCGGCG ATGCGGTCGG GGTCGACGTG
GCCGCTCAGA CGACCGATGG ACAGGTCCGC GGCTCGCCCG TTCTCGATCT CTTCCTCTCG
CAGCGAACCG TCTCGAGCGG CACCGAGTCG CAGGTGATGG TCGACATCCT CAACACGGGT
GAGATGGACA TGGGCAACGA CCTCGACGAC CGCGTGACGA CCGCCCGCGG ACTCACGCTG
GAGGTCGACG ACGGCGACGT GCCCATCGAG GTGGGCGACG GCACGACGGT GGTCGGCGAC
GTTCGAACCG ACGCGAGTCC CGTTCAGGTC CCGCTCGATG TCACGGTCCC CGACGACGTG
CCAGATGGGC AGTACGAGGT CGAGGTGACC GCCCGCTACC GGTACACCTA CGAGGTGATC
CCCGAGTTCA ACAACCACAA GGACTACCGC GGAATCGACC GCTTCGACGT CACGATCGTC
GTCGACGACG GCGCCCGGTT CGCGATCCTC GACACCGAGA CGGACGCGCA GGTCGGCGGG
AGCGGTGACG TAACTGCGAC CCTCCGAAAC GTCGGCGACG AGGTCGCCCG CGACGCGATC
GTCACGGGGA CCACGACCGG GAGCGGGGCC GTAATCGGCA GCGACGGCAG CGGTGAGACG
TTCGTCGGAA ACTGGGAGCC CGGTGAGAAC CGGACCGTGA CGTTCGACTC CACGATCTCG
CCCGACTTCG GCGGGGGGGC GTACGCGTTC GTCTCGACGG TCGACTACCG CGACCGCGAC
GGGATCGAGG AGACCGCGCC GTCCTCGCGG GCGGGCGTCG TCCCGGCACC CGAGCAGTCG
TTCTCGGTCG AGAACGTCGA GGGAACCCTC GAAGTCGGTT ATTCGGGGAC CGTCTCCGGG
ACGCTCACGA ACGAGGGCCC GCTCGATGTC GACGACGCGG TGCTGGTCGC GGACCCGCAG
AGCCAGCGGG TGAGCCTCGG GGAGAGCCGG TACGCGCTCC CGGACATCCC GGCCGGCGAG
TCGGTCGAGT TCTCCTTCGA CGCGGACGTG AACGGCAACG CCGACCCCGG ACCGCGGCAG
TTCCGGTTCA CGACCGAATA CACGAGCGGC GACTCGACGA TCGCGGTCGA CGAGACGCGC
CGGATCGAGG TGGCGCCGCG CCAGCCCGAG TTCGACCTCG TCGCCGACAA CACGACGGTG
CCGGCCGGCG AGACGCGCCG GGTCTCCTTC GAGATCACGA ACCAGCGACC GGAGACGCTC
TCGTCGATCA ACGCCGGGCT GTACGCCGAC AGTCCGCTGT CCGCTCCCAA CGACGAGGCG
TTCGTCGACG AGCTCGAACC GGGCGAGTCG ACGGAGATAT GGTTCGAGGT GTCGGCCGCG
CCCGGCGCCA GCGTCGAGAC CCACCCGGTC GAGTTAGACT TCCGGTACAA CGACGAGCGG
GGCAACGACC GGATTTCGGA CGTGACGCAG TTCCCGATCG ACGTGACCGA GTCCACCGAC
GACGGCGGGC TCCCCATCAC CGCGCTCGTC GTCGGCCTGC TCGTCGTGGT CGGCGTCGCG
GGCACAGTGG TCTGGTACCG GCGGCGGTAA
|
|---|
| Protein sequence | MSRAAKIGTL VLAFVAAGAL VAGVALSGAA APGSGDALDR GQAALVGSNA IGGDAVGVDV
AAQTTDGQVR GSPVLDLFLS QRTVSSGTES QVMVDILNTG EMDMGNDLDD RVTTARGLTL
EVDDGDVPIE VGDGTTVVGD VRTDASPVQV PLDVTVPDDV PDGQYEVEVT ARYRYTYEVI
PEFNNHKDYR GIDRFDVTIV VDDGARFAIL DTETDAQVGG SGDVTATLRN VGDEVARDAI
VTGTTTGSGA VIGSDGSGET FVGNWEPGEN RTVTFDSTIS PDFGGGAYAF VSTVDYRDRD
GIEETAPSSR AGVVPAPEQS FSVENVEGTL EVGYSGTVSG TLTNEGPLDV DDAVLVADPQ
SQRVSLGESR YALPDIPAGE SVEFSFDADV NGNADPGPRQ FRFTTEYTSG DSTIAVDETR
RIEVAPRQPE FDLVADNTTV PAGETRRVSF EITNQRPETL SSINAGLYAD SPLSAPNDEA
FVDELEPGES TEIWFEVSAA PGASVETHPV ELDFRYNDER GNDRISDVTQ FPIDVTESTD
DGGLPITALV VGLLVVVGVA GTVVWYRRR
|
|---|
| |