Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Hlac_1187 |
Symbol | |
ID | 7399454 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Halorubrum lacusprofundi ATCC 49239 |
Kingdom | Archaea |
Replicon accession | NC_012029 |
Strand | - |
Start bp | 1193487 |
End bp | 1194404 |
Gene Length | 918 bp |
Protein Length | 305 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 643708252 |
Product | MscS Mechanosensitive ion channel |
Protein accession | YP_002565851 |
Protein GI | 222479614 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3264] Small-conductance mechanosensitive channel |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.0250538 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 5 |
Fosmid unclonability p-value | 0.00000123969 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGGGAGCCC ACGCAGGGAC GCTCGGAACC GTCGCAGTCG CGGGCACGCT GGAACCGTTC CTCGGCCCGC TGACCGGTCT CGTCGTCGAC GCCGCGATCT TCCTCGTCGT CGTCGTCGCG ACATACGTGC TTTATAAGGC GGCGATCGCA CCGCTTGTCG GACGACTCTT CGACAGGCAG GGTCTCGACG AGCACGCGCG GCGCCCGCTC CAGAAGATCG TCGCGTTCCT CGTGTTGTTC GCGGGCGTCA CGGCCGCGTT CGGCGCGGCG GGGTATCAGG GGTTCCTGCG CTCGCTGGCG ACGATCGCCG CCGCGGCGAC GCTCGCGATC GGCTTCGCGC TCCAGGACGT GATCAAGAAC TTCGTCGCGG GCGTCTTTAT TTATACGGAC AGGCCGTTCC GCATCGGCGA CTGGATCGAG TGGCAGGGGA ACTCGGGGGT CGTGGAGGAC ATCTCCTTCC GAGTCACTCG CGTGCGCACG TTCGACAACG AACTGCTCAC GGTGCCGAAC CACACCCTGA CGAGCGATGT GGTGAAAAAC CCCGTCGCGA AGAAGACGCT GCGCCTGAAG TTCGTCTTTG GGATCGACTA CGAGGACGAC GTGGACAAAG CGACCGAGAT CATCGTCGAG GAGGCCGAGC GCAGCGACGC GATCTTGGAC GATCCCGCTC CCTCGGTGCG GCTGACCGAG CTTGCCGACT CGTACGTCGG GCTCCAGTCG CGGATCTGGA TCGACGACCC CTCACGGGCC GACTTCGTGA AGGCGCGCGC TGACTACGTG AAGGCCGTTA AGGAGCGGTT CGACGAGGAA GGTATCTCGA TCCCGTTCCC GCAGCGCACC GTCTCGGGGC GGAACGAGTG GGCTGAGCCC TCGTCGTTCA GTGCGATGGC GGAGGCCGGC GTCGGCGGAG ACTCGTAG
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Protein sequence | MGAHAGTLGT VAVAGTLEPF LGPLTGLVVD AAIFLVVVVA TYVLYKAAIA PLVGRLFDRQ GLDEHARRPL QKIVAFLVLF AGVTAAFGAA GYQGFLRSLA TIAAAATLAI GFALQDVIKN FVAGVFIYTD RPFRIGDWIE WQGNSGVVED ISFRVTRVRT FDNELLTVPN HTLTSDVVKN PVAKKTLRLK FVFGIDYEDD VDKATEIIVE EAERSDAILD DPAPSVRLTE LADSYVGLQS RIWIDDPSRA DFVKARADYV KAVKERFDEE GISIPFPQRT VSGRNEWAEP SSFSAMAEAG VGGDS
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