| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hlac_1149 |
|---|
| Symbol | |
|---|
| ID | 7400958 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Halorubrum lacusprofundi ATCC 49239 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_012029 |
|---|
| Strand | - |
|---|
| Start bp | 1156156 |
|---|
| End bp | 1157484 |
|---|
| Gene Length | 1329 bp |
|---|
| Protein Length | 442 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 643708214 |
|---|
| Product | Extracellular ligand-binding receptor |
|---|
| Protein accession | YP_002565813 |
|---|
| Protein GI | 222479576 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCACCAA ATAGCATGGA CTTGGTCGAC CGGAGAACGC TGCTGAAACT GACGGGAGGA
GCGGGCGTTG GCGCGCTCGC GGGCTGTCTC AGCACGACCG ACGACGGCGA AGACGGATCC
GACGGGAGCG ACGGGAGCGA CGGGAGTGAC GGGAGCGATG GCGAGAACGG AACCGACGGC
GACGACGGGA GCGACGACGG AGGAGACTCG ACCGACGCCT ACGAGATCGG GATGGTCGAC
TCGCAGACCG GGTCGCTGTC GGCGTTCGGC GAGCGGAACC AGCGCGGCGT CAACCTCGCC
TTACAGCGCG TCAACGAGAT CGGCATCGAC GGCCGCGACC TCGAGATCAT CGTCGAAGAC
TCCGAGAGCG AGAACCAAGG CGGGATCGCC GCCGCCCAGA AGCTCGTCAA CCAGGACGGC
GTGCCCTTCC TCATCGGCGC AGTCGGCTCC GGCGTCTCGC TGGCAATCTA CGAGAGCGTC
GTGGAGGGGA CGGACGTCGT CCAGCTAAGC CAGAACTCCA CGGGGCTCAA CCTCACGGAT
TTCCCGGGGC TGCTCCGGAT GTCACCGTCG GGCCGCAGCC AGTCGCTCGC GCTGTCGAAC
CTCATCACTG ACGACGGCTA CGACGAGGTG GCGATCACCT ACGTCAACAA CGACTACGGC
CAGAGCCTCA CCGACGCGTT CGTCGACGCG TACGACGGCG AGGTCGTCTA CAACAGCCCG
CACGACCAGG AGCAGCAGTC CTACTCGGGA GTCATCTCCG AGATGAACAG CTCGGGCGCC
GACGCGTGGC TGTTCATCAC CTACCAGGCC GAGTTCGCGA CGATGGTCAA CGAGGTGTAC
TCGTCGGGCT ACGAGGCGCA GTTCTACGGC GCCGACTCCG TCTCCGGCGA CAACGTCCTC
GAGAACACGC CGGAGGGAAG TATCGACGGC ATGAAGATCG TGGTCCCCTC CGCGCCGATC
GAGGAGGAGA ACTACCAGTC GTTCGCGTCG GACTTCGAGG AAGAGTACGG CCGGCAGCCG
ACCTCGTGGG CCGCGTACGC GTACGACTGC GCGATCAACG CCGCGCTCGC GATCCAGGCC
GCCGACGAGT TCACCGGCGC GGCGCTTCAG GAGACCGTCC GGCGTGTCTC CGGCCCCGAA
GGGGAGGAAG CGACCTCCTT CGAGGCCGCC AGCCAGATCC TCGCAGACGG CGGCGGTCCC
GACGACGTCG ATTACCAAGG GGTCAGCGGT CCCATCGACT TCGACGAGAA CGGGGACCCG
GTCGGTTTCC TTCAGGTCTT GGAGGTCCAA GACCACGCGT ACGAAGGTAT CGACTTCATC
GAAGGCTGA
|
|---|
| Protein sequence | MSPNSMDLVD RRTLLKLTGG AGVGALAGCL STTDDGEDGS DGSDGSDGSD GSDGENGTDG
DDGSDDGGDS TDAYEIGMVD SQTGSLSAFG ERNQRGVNLA LQRVNEIGID GRDLEIIVED
SESENQGGIA AAQKLVNQDG VPFLIGAVGS GVSLAIYESV VEGTDVVQLS QNSTGLNLTD
FPGLLRMSPS GRSQSLALSN LITDDGYDEV AITYVNNDYG QSLTDAFVDA YDGEVVYNSP
HDQEQQSYSG VISEMNSSGA DAWLFITYQA EFATMVNEVY SSGYEAQFYG ADSVSGDNVL
ENTPEGSIDG MKIVVPSAPI EEENYQSFAS DFEEEYGRQP TSWAAYAYDC AINAALAIQA
ADEFTGAALQ ETVRRVSGPE GEEATSFEAA SQILADGGGP DDVDYQGVSG PIDFDENGDP
VGFLQVLEVQ DHAYEGIDFI EG
|
|---|
| |