| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hlac_1092 |
|---|
| Symbol | |
|---|
| ID | 7400164 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Halorubrum lacusprofundi ATCC 49239 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_012029 |
|---|
| Strand | - |
|---|
| Start bp | 1095643 |
|---|
| End bp | 1096947 |
|---|
| Gene Length | 1305 bp |
|---|
| Protein Length | 434 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 643708158 |
|---|
| Product | Extracellular ligand-binding receptor |
|---|
| Protein accession | YP_002565757 |
|---|
| Protein GI | 222479520 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.629609 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 30 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGAGGAA ATCCCGCGGA TAGTGTCAGT AGACGGTCGT TTGTCAAATA CAGCGGTGCG
GCCGGCGTCA CCGGTGCCCT GGCTGGCTGT AGCAGTAACG GCGGCGACGG CGGCGACGGC
AGTGATGGCG GCGACGGCGG CGATGGTGGT AGCGGCGGAG GCGGTGACGG AAGCGACGGC
GGCGACGCCC CAGACGAGGT GATCATCGGG TCGAACCACC CGCTGAGCGG GGCGCTCAGC
AACACCGGCG AGCGCATGGA CCAAGCGGTC CGACTGGCCG CGATGATGAA GAACGAGTCG
GGCGGCATCG AGTCGCTCGA CGGGGCAGAG CTCAGCGTCA TCAGCGGGGA CAACGAGGGC
GCACAGGAGC TCGGCGGCGA AGTCGCCCAA GAGCTCATCG ACGACGGTGC CAGCGTGCTG
ACCGGCTGCT ACTCCTCGCC GGTGACGAGC GCCGCGACCC GGACGTCGGA GAGCGCGGGC
GTGCCGTTCG TCATCTCGGT GTCCGTGGCC AACTCGATCC TGCGGGAGAC GCAGCTCAAC
TACGCGTACC GGCCCCAGCC GCCGGCGGAC CAGATGGCGA TCGACCACGC GCGACTCCTC
GCTGACACCA TCCGGAACGC CGGCGAGGAG ATCGAGACCG CGGGGCTGTT CTACATCGAC
ATCAGCTTCG GCCAGTCGAT CCGCGACGCG CTCCGGGAGG AGCTCCCGGC GAACGACATC
GAGATCGTCG CCGAGACCGC CTACGAGCCG GGCGACACCG CAGACACGCA GGTCACGTCG
CTCCGGGACG CGGACCCCGA CGCCGTCATC GCGACCACCT ACCGGTCGGG GACGATCGAG
CTCGTCAACG CGATGGACAA CCAGAACTAC CAGCCGGACT ACGTGACCGG CTGTTCGAAC
GCGGCGATGA ACGACATCAG TGCGCTCGAA GAGATGGGCG ACACCGTAGA GGGCGGGTTC
GCAACCAACT TCGCGCTCGA CCCGACGTCC GACCGCGCCG GCGAGGTCCG ATCGCGCTTC
GAGTCGGAGT TCGACTCCGG ATTCGACGCG AACGTCGCGA TGACCTACGC GGCCACCGAG
GTCATCATCG CGGCGATCGA GGAGGCGGGC TCGGCCGACC CCGAAGACAT CAACAATGCG
CTCGGAGAGA TCACCGTCGA GGATCACATC GCGGCGATGC CGCCTATCAC CTTCGCCGAC
AACGGTGAAA ACGAGAACGC GCTCGCTCCG CTGTTCCAGA TTCAGGATCT CGAGGACCGC
GTCGTCGCAC CCGAGGAGTT CGCCGAGACC GACGCGCAGT TCTGA
|
|---|
| Protein sequence | MGGNPADSVS RRSFVKYSGA AGVTGALAGC SSNGGDGGDG SDGGDGGDGG SGGGGDGSDG
GDAPDEVIIG SNHPLSGALS NTGERMDQAV RLAAMMKNES GGIESLDGAE LSVISGDNEG
AQELGGEVAQ ELIDDGASVL TGCYSSPVTS AATRTSESAG VPFVISVSVA NSILRETQLN
YAYRPQPPAD QMAIDHARLL ADTIRNAGEE IETAGLFYID ISFGQSIRDA LREELPANDI
EIVAETAYEP GDTADTQVTS LRDADPDAVI ATTYRSGTIE LVNAMDNQNY QPDYVTGCSN
AAMNDISALE EMGDTVEGGF ATNFALDPTS DRAGEVRSRF ESEFDSGFDA NVAMTYAATE
VIIAAIEEAG SADPEDINNA LGEITVEDHI AAMPPITFAD NGENENALAP LFQIQDLEDR
VVAPEEFAET DAQF
|
|---|
| |