| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hlac_1031 |
|---|
| Symbol | |
|---|
| ID | 7400102 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Halorubrum lacusprofundi ATCC 49239 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_012029 |
|---|
| Strand | - |
|---|
| Start bp | 1022906 |
|---|
| End bp | 1025053 |
|---|
| Gene Length | 2148 bp |
|---|
| Protein Length | 715 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 643708098 |
|---|
| Product | type II secretion system protein |
|---|
| Protein accession | YP_002565698 |
|---|
| Protein GI | 222479461 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1955] Archaeal flagella assembly protein J |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 0.549235 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATCGCGT ACCTCCCCCT GCTCGCCGCG TTCGGGTGCT GTCTGGCGCT GCTGCTGCCC
GCGGTCGACG ACGGTGCCGA CCTGGTCGTG ACCCGCGTCG CGCTGTCGCT CTTCGGCGAC
TACGTCGGCG AGGACGGGCC GCGGCGCCAG CGCCAGCGCG ACCTGATGCG CGCCGCTCAC
GTCGCGGGCA CCCACCGGAC GTACGCCGCC AAGACGCTCC TGTACGCGGG CGTCCTCGGC
GTCGCCGGCA GCGTCATCGG CGTGTACGCC GCGGCCGGGC TCCTCTCGGT GCTCGACGTG
AGCGAGGCGG CCCTCCGTGG GACGCTCCCC GCGTCGCTCG GGTTCGTCGC CGGCGTGACC
CGGCTCACGG AGCTCGGGCT CCCCAAACTC TTCCTCCTGT TGACGCTGGC GTCGGCGACC
CTCGGCGCCG CGCTCGCGGT CGGGATGTAC TACGGGCGGT GGGAGCTGCT CGACCAACGC
GCTCACGCTC GGGGAGCGGA GATCGACGCC ACCCTGCCCC GGACGGTCGC GTTCATGTAC
GCGCTCTCGC GGTCGGGGAT GCCGTTCCCA CGCGTCATGG ACACGCTCGC GGAGAACGAG
GCGGTGTACG GCGAGGCGGC GACGGAGCTG TCGGTCGCCG TCCGCGACAT GAACGCCTTC
GGTACCGACG CGCTGACCGC GCTCCAGCGC ACCTCCCGGC GCACCCCGAG CGACGATCTG
GCCGACTTCG CGGAGAACCT CGCGTCCGTG CTCGGCACCG GCCAACCCAT CTCGACGTTC
CTCAGCGACC AGTACGAGCT GTATCAGGAG GAGGCCGAGT CGAAACAGCA ACAGTACCTC
GAACTCCTGT CGACGTTCGC GGAGGCGTAC GTCACCGCGC TGGTAGCGGG ACCGCTGTTT
TTCATCACCA TTCTCGTCGT GATCGGGCTC GTGTTGGAGG ACACGCTCCC CCTGTTGCGC
GTCGTGGTCT ACCTCGGGGT ACCGCTGGCG ACGTTCGGGT TCGTGGTCTA CGTCGACAGC
GTCACGCAGG GAATCGGCGG CACCGAGACT GTTGACCTCT CAGAGGCGAT CGAAGACGAA
TCAGGGATGA GCGACACCGC AAGCGCGCAG GCGGACGGGA ATCCCCAGCC CGACGGCGGC
GTGGCGGGCG GGTCGCCGTC GGCGGACCGC TGGGCGGCGA GCCGCGAGCG CCTCCGAGCG
TACGATCGGA TCCGAACGCT GCGGCGGTGG GCTGCGTCGC CGGTCGAGAG CGTGCTCGGC
GCGCCGCGAA CGGTGTTTCT CCTGTCCGTT CCGCTCGCGG TCGTCGTCCT GCTCGTGACC
GCCTTCCCGA TCACCCTCGG ACCGCCGACC GAGATGGTCG CACAGGTCGA GACCCCGATC
GTCGCCGCGA CCGTGGTCGT GCTCGCGAGC TACGCCGTCG TCTACGAGGC CCACAAGCGC
CGAGTCCGCC GGATCGAGTC GGCGGTTCCA GACTTTCTCG ACCGCCTCGC CAGCGTCAAC
GAGGCGGGCA CGTCCGTGGT CGGGAGCGTC CGGCGCGTCG CGGACTCGAA CCTGGAGGCC
CTGACCGACG ACCTGCAGCG CACCCGGCGC GACATCGACT GGGGCGCCGA CGTGGGCACC
GCTCTCCGGC GGCTAGAGCG ACGAGTCCGA TCGCCGATGA CCTCGCGGGC GGTCGCGCTC
ATCACGAACG CGATGCGTGC CAGCGGCGAT GTCGGCCCCG TGCTCCGAAT CGCGGCCGAC
GAGTCGCGCG CGACGTGGTC GCTCCGTCGG GAGCGCCGAC AGGTAATGCT CACGTACCTC
ATCGTGATCT ACATCTCCTT CCTCGTGTTC CTCGGAATCA TCGCCTCGCT GTCGGTGTCG
TTCATCCCCG CGATCGAGGA GGCGGCGATC CCCGGTGCCG GCGCCGGCAC TAGTGCGAGC
GACCTTCCGG GCGCGCCGAG CGGTCCCGGA GGGATCACGG ACGGGCTTGG GGACATCAAC
ACGACCGCCT ACGAGCAGCT GTTCTTCCAC GCCGCCGCGA TACAGGCGGT CTGTTCCGGA
CTCGTCGCCG GACAGCTCGG CGAGGGCTCG GTCAGAGACG GCGTGAAACA CGTCGTCGCC
CTGCTGTTGT TGACGCTCGC CACGTTCCTC GTCATCGACT TGGTGTGA
|
|---|
| Protein sequence | MIAYLPLLAA FGCCLALLLP AVDDGADLVV TRVALSLFGD YVGEDGPRRQ RQRDLMRAAH
VAGTHRTYAA KTLLYAGVLG VAGSVIGVYA AAGLLSVLDV SEAALRGTLP ASLGFVAGVT
RLTELGLPKL FLLLTLASAT LGAALAVGMY YGRWELLDQR AHARGAEIDA TLPRTVAFMY
ALSRSGMPFP RVMDTLAENE AVYGEAATEL SVAVRDMNAF GTDALTALQR TSRRTPSDDL
ADFAENLASV LGTGQPISTF LSDQYELYQE EAESKQQQYL ELLSTFAEAY VTALVAGPLF
FITILVVIGL VLEDTLPLLR VVVYLGVPLA TFGFVVYVDS VTQGIGGTET VDLSEAIEDE
SGMSDTASAQ ADGNPQPDGG VAGGSPSADR WAASRERLRA YDRIRTLRRW AASPVESVLG
APRTVFLLSV PLAVVVLLVT AFPITLGPPT EMVAQVETPI VAATVVVLAS YAVVYEAHKR
RVRRIESAVP DFLDRLASVN EAGTSVVGSV RRVADSNLEA LTDDLQRTRR DIDWGADVGT
ALRRLERRVR SPMTSRAVAL ITNAMRASGD VGPVLRIAAD ESRATWSLRR ERRQVMLTYL
IVIYISFLVF LGIIASLSVS FIPAIEEAAI PGAGAGTSAS DLPGAPSGPG GITDGLGDIN
TTAYEQLFFH AAAIQAVCSG LVAGQLGEGS VRDGVKHVVA LLLLTLATFL VIDLV
|
|---|
| |