Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Hlac_0671 |
Symbol | |
ID | 7401806 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Halorubrum lacusprofundi ATCC 49239 |
Kingdom | Archaea |
Replicon accession | NC_012029 |
Strand | + |
Start bp | 687712 |
End bp | 688641 |
Gene Length | 930 bp |
Protein Length | 309 aa |
Translation table | 11 |
GC content | 72% |
IMG OID | 643707737 |
Product | diaminopimelate epimerase |
Protein accession | YP_002565343 |
Protein GI | 222479106 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0253] Diaminopimelate epimerase |
TIGRFAM ID | [TIGR00652] diaminopimelate epimerase |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 0.00498295 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
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Sequence |
Gene sequence | ATGAGCACCC ACGCCGTCCC GTTCGAGAAG TACCACGGTA CGGGGAACGA CTTCCTCGTC GTCGACGCGG ACGCTGAGGT CGTCGGCGAC CGCGCGGCCT TCGCGCGCAC CCACTGTGAC CGCGAGACTG GTGTCGACGG GGGGGATTTC GACGCCGAGA GAAATGAGGA ATCCACCGGC CGACGCGGCG CCGACGGCGT CCTCTTTCTC AGCGTCGAGG AGCGGTTCAA CCCCACCCGC GTCGTGATGA CGCTGGTCCA GCCCGACGGC TCCACGGCGA CAATGTGCGG CAACGGCGCG CGCGTCGTCG CGCTGTGGGC CCACGACCGG ACGGGCGACC GCGAGTTCAT GATCGACACG CAGGCCGGTA CCCGACGCGC CTCCGTGAAC GCGGACGCGA CCGCGGCCAC CATCGAAATG GGCGAGCCGA CGTTCGACCC TGCGCGCGTC CCCCTCGCCC GTGACGAGCC GCTGATCGAC GAGCCGGTCG AGGGGCTAAC CGTTACCGCC GTCAACACCG GGGTCCCGCA CGCGGTGGCG TTCGTCGACG GCGGTCGCAG CGACCCCGAC GGGATCGACT CGGTCGATCT CGACGCGGTC GCGCCTCCCG TCCGTCACGC CGACGTGTTC CCCGAGGGCG CGAACGTAAA CCTCGCGAGC GTCGTCGACG ACGGAAGTGG TGACGGTCCC GCCCTCATCG ACCAGCGCAC CTTCGAGCGC GGCGTCGAGG GCGAGACCCG CTCTTGTGGT ACCGGCGCGG TCGCGGTCGT CGCGGCCGCG CGACGACTCG GCCTGATCGA CGGCGAATCG GCCGTCAGCC GGCCGCCGGG CGGCGACCTC GAAGTTACGG TACCGGACCG CGGCCACGCG ACCCTGACCG GTCCCGTCGC CCGCGAGTAC GAGGGGACGC TCCCGGCCGA CCCGCGATGA
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Protein sequence | MSTHAVPFEK YHGTGNDFLV VDADAEVVGD RAAFARTHCD RETGVDGGDF DAERNEESTG RRGADGVLFL SVEERFNPTR VVMTLVQPDG STATMCGNGA RVVALWAHDR TGDREFMIDT QAGTRRASVN ADATAATIEM GEPTFDPARV PLARDEPLID EPVEGLTVTA VNTGVPHAVA FVDGGRSDPD GIDSVDLDAV APPVRHADVF PEGANVNLAS VVDDGSGDGP ALIDQRTFER GVEGETRSCG TGAVAVVAAA RRLGLIDGES AVSRPPGGDL EVTVPDRGHA TLTGPVAREY EGTLPADPR
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