Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Hlac_0669 |
Symbol | dapD |
ID | 7401804 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Halorubrum lacusprofundi ATCC 49239 |
Kingdom | Archaea |
Replicon accession | NC_012029 |
Strand | + |
Start bp | 685518 |
End bp | 686357 |
Gene Length | 840 bp |
Protein Length | 279 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 643707735 |
Product | 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase |
Protein accession | YP_002565341 |
Protein GI | 222479104 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG2171] Tetrahydrodipicolinate N-succinyltransferase |
TIGRFAM ID | [TIGR00965] 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase |
| 

|
Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.194983 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 0.00501049 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
| |
Sequence |
Gene sequence | ATGACGCTTG AAGCCGACGT ATCCGATCTG TGGGACCGCT ATCAGGACGG GCTGACCGCC GCCGACGCGA CGGCCGAGGA CGCCGCCGTC GTCGACGAGT TCCTCGCCGC GCTGGAGGCC GGCGAGGTCC GCGCCGCCGA GAAGACCGGC GACGACGTAA CCACGTGGGA GGCCAACGAG TGGGTCAAGC GCGGCATTCT GCTGAACTTC GGCCTGCGCG AGACCGAGGC CCGCGAGTAC GGCGGCGTGA CCTACCACGA CGTACTCCCG CTGCGCGATA CCGCCGACCT CGGCGAGCGC GGCACCCGAA ACACGCCGGA CGGCACCGCG ATCCGCCGGG GCGCGTACCT CGGCAGCGAC TGCATCATGA TGAGCCCCTC GTTCGTCAAC ATGGGGGCGT ACGTCGGCGA CGGCACGCTC GTCGACTCGT GTGACACGGT CGGCTCCTGC GCCCAACTCG GCGAGAACGT CAAGCTCGGC GCCAACACGC TGATCGGCGG CGTCCTCGAA CCGGTCGAGG ACGCGCCGGT GATCGTTGAG GACGGCGTCT CGCTCGGCGC CGGCTGTCGA GTCACGAGCG GGTTCCGCGT CGGCGAGAAC TCGATCGTCG GCGAGAACAC CCTGCTTACC CCCCGAATCC CCGTCTACGA TCTCGTCGAG GAGGAGGTCA TCTACGGCCA CCTCCCGGCC GAGCGCCGGG CGTTCACCCG GATGGTCGAG TCGTCGGTCG GCGACCACGA CCTCTTCGAG GGCGGCGCGT ACAAGCCCGC GGTCGTCGCG ACTCACGTCG AGGAGGAGAC GCTGGAGGCG ACGCAGCGAG AGGACGCGCT CCGGGAATGA
|
Protein sequence | MTLEADVSDL WDRYQDGLTA ADATAEDAAV VDEFLAALEA GEVRAAEKTG DDVTTWEANE WVKRGILLNF GLRETEAREY GGVTYHDVLP LRDTADLGER GTRNTPDGTA IRRGAYLGSD CIMMSPSFVN MGAYVGDGTL VDSCDTVGSC AQLGENVKLG ANTLIGGVLE PVEDAPVIVE DGVSLGAGCR VTSGFRVGEN SIVGENTLLT PRIPVYDLVE EEVIYGHLPA ERRAFTRMVE SSVGDHDLFE GGAYKPAVVA THVEEETLEA TQREDALRE
|
| |