| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hlac_0669 |
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| Symbol | dapD |
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| ID | 7401804 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Halorubrum lacusprofundi ATCC 49239 |
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| Kingdom | Archaea |
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| Replicon accession | NC_012029 |
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| Strand | + |
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| Start bp | 685518 |
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| End bp | 686357 |
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| Gene Length | 840 bp |
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| Protein Length | 279 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 643707735 |
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| Product | 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase |
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| Protein accession | YP_002565341 |
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| Protein GI | 222479104 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG2171] Tetrahydrodipicolinate N-succinyltransferase |
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| TIGRFAM ID | [TIGR00965] 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.194983 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.00501049 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGACGCTTG AAGCCGACGT ATCCGATCTG TGGGACCGCT ATCAGGACGG GCTGACCGCC
GCCGACGCGA CGGCCGAGGA CGCCGCCGTC GTCGACGAGT TCCTCGCCGC GCTGGAGGCC
GGCGAGGTCC GCGCCGCCGA GAAGACCGGC GACGACGTAA CCACGTGGGA GGCCAACGAG
TGGGTCAAGC GCGGCATTCT GCTGAACTTC GGCCTGCGCG AGACCGAGGC CCGCGAGTAC
GGCGGCGTGA CCTACCACGA CGTACTCCCG CTGCGCGATA CCGCCGACCT CGGCGAGCGC
GGCACCCGAA ACACGCCGGA CGGCACCGCG ATCCGCCGGG GCGCGTACCT CGGCAGCGAC
TGCATCATGA TGAGCCCCTC GTTCGTCAAC ATGGGGGCGT ACGTCGGCGA CGGCACGCTC
GTCGACTCGT GTGACACGGT CGGCTCCTGC GCCCAACTCG GCGAGAACGT CAAGCTCGGC
GCCAACACGC TGATCGGCGG CGTCCTCGAA CCGGTCGAGG ACGCGCCGGT GATCGTTGAG
GACGGCGTCT CGCTCGGCGC CGGCTGTCGA GTCACGAGCG GGTTCCGCGT CGGCGAGAAC
TCGATCGTCG GCGAGAACAC CCTGCTTACC CCCCGAATCC CCGTCTACGA TCTCGTCGAG
GAGGAGGTCA TCTACGGCCA CCTCCCGGCC GAGCGCCGGG CGTTCACCCG GATGGTCGAG
TCGTCGGTCG GCGACCACGA CCTCTTCGAG GGCGGCGCGT ACAAGCCCGC GGTCGTCGCG
ACTCACGTCG AGGAGGAGAC GCTGGAGGCG ACGCAGCGAG AGGACGCGCT CCGGGAATGA
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| Protein sequence | MTLEADVSDL WDRYQDGLTA ADATAEDAAV VDEFLAALEA GEVRAAEKTG DDVTTWEANE
WVKRGILLNF GLRETEAREY GGVTYHDVLP LRDTADLGER GTRNTPDGTA IRRGAYLGSD
CIMMSPSFVN MGAYVGDGTL VDSCDTVGSC AQLGENVKLG ANTLIGGVLE PVEDAPVIVE
DGVSLGAGCR VTSGFRVGEN SIVGENTLLT PRIPVYDLVE EEVIYGHLPA ERRAFTRMVE
SSVGDHDLFE GGAYKPAVVA THVEEETLEA TQREDALRE
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