| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hlac_0572 |
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| Symbol | truD |
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| ID | 7401707 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Halorubrum lacusprofundi ATCC 49239 |
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| Kingdom | Archaea |
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| Replicon accession | NC_012029 |
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| Strand | - |
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| Start bp | 588961 |
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| End bp | 590412 |
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| Gene Length | 1452 bp |
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| Protein Length | 483 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 643707637 |
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| Product | tRNA pseudouridine synthase D |
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| Protein accession | YP_002565244 |
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| Protein GI | 222479007 |
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| COG category | [S] Function unknown |
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| COG ID | [COG0585] Uncharacterized conserved protein |
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| TIGRFAM ID | [TIGR00094] tRNA pseudouridine synthase, TruD family |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.0939983 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 0.837825 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCGCCGT CCATCCCCCT CCGCGAGGCG CACCCGGCCG AGCGCGCCGC GGGAATCGAC
CACTACGTCA GCGACGCCGA CGGGATCGGT GGCCGGCTCC GCGAGTCGCC CGACGACTTC
CGCGTCCGCG AACTGGAGGC GTTCGAGCCG GAGCCGCTCG GCGCGGACAC CGGGAGCTAC
CCCGAACTCG TCGTCCGCGT CACCCTCCGC GACTGGGACA CGAACGACTT CGCGCGCCGG
ATCTCCGACG CCCTCGGTAT CAGCCGCGAG CGCGTGTCGT GGGCGGGGAC GAAGGACAAG
CGCGCCGTCA CCACGCAGCT GTTCACGCTC CGCGAGGTCG ACCCCGACGA TCTCCCCGAG
ATCCGCGGCG CCGAGATCGA GCCCCTCGGC CGCGCCGGTC GCAGGCTCTC GTTCGGCGAC
CTCGCGGGCA ACGCCTTCGA GATCCGCGTC GCCGATACGG TCCCCGAGGC TCCCGAGCGC
GTCGCCGACG TGGTCGGTGA CCTTCGGGCG TTCGGGGGCG ACGCGGAAGA GGCGAAAGAC
GACGCCACCG TCGGCGTCCC CAACTACTTC GGCCAGCAGC GCTTCGGGAG TCGGCGGCCC
GTCACCCACC GCGTCGGGCT CGCCGTCGTA CGCGACGACT TCCGCGAGGC GGTGCGGCTG
TACGCCGGCA ACTCCTCGGA TACGGAGCCC GACGACACCC GCGCCGCGCG CGACCGGGTG
GACGCCGCGT TCGGGGTCGG GGGGGACGAT ACGGGAGACG GCTCCGACCC CTCCGCCGAC
GGCACCGGCG ACGGCGACTG GGAAACCTGC CTCGACGCGA TCCCGGGCAA GCTCCGGTTC
GAGCGCTCGA TGGTCCACCG GCTCGCCGAG CGGGACGTGG CTCCCGACGC GCCGCCGGAT
CACGAGGACT GGCGGCACGC GCTGGAGGCG GTCCCCTCGA ACCTCCAGCG ACTCTTCGTC
AACGCCGCTC AGTCGTTCCT GTTCAATCAG GTGCTGAGCG AGCGCCTGCG CCGCGGCCTC
TCGTTTGACC GACCCGTCGC CGGCGACGTG GTGTGTTTCG CCGACGGCGA CGCTCCCGAG
GAGCTGTACG CGCCCGACAC GGACCGGCTC CAACGGGTCG ACGAGGACAG AGTTGCCGTC
GTCACCCGCC ACTGCGAGCG CGGTCGGGCG TTCGTCACCG CCCCCCTCAT CGGCACGGAG
ACGGACCTCG GAGACGGTGA GCCCGGCGAG ATAGAGCGCG AGGTTCTCGC CGACGCCGGG
ATCGAGCCCG GCGACTTCGC GCTCCCCGGC GACTTTGACT CGTCGGGTAC TCGGCGGGCG
ATCCTGCTCC GAAGCGACCT CAACGTGACG TTCGACGACG GCGATCCACG GTTCGCGTTC
GCGCTTCCGA GCGGATCGTA CGCGACGGTG CTCCTCCGGG AGTTCACGAA GAGCGGCCCG
CTCGACCTCT GA
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| Protein sequence | MAPSIPLREA HPAERAAGID HYVSDADGIG GRLRESPDDF RVRELEAFEP EPLGADTGSY
PELVVRVTLR DWDTNDFARR ISDALGISRE RVSWAGTKDK RAVTTQLFTL REVDPDDLPE
IRGAEIEPLG RAGRRLSFGD LAGNAFEIRV ADTVPEAPER VADVVGDLRA FGGDAEEAKD
DATVGVPNYF GQQRFGSRRP VTHRVGLAVV RDDFREAVRL YAGNSSDTEP DDTRAARDRV
DAAFGVGGDD TGDGSDPSAD GTGDGDWETC LDAIPGKLRF ERSMVHRLAE RDVAPDAPPD
HEDWRHALEA VPSNLQRLFV NAAQSFLFNQ VLSERLRRGL SFDRPVAGDV VCFADGDAPE
ELYAPDTDRL QRVDEDRVAV VTRHCERGRA FVTAPLIGTE TDLGDGEPGE IEREVLADAG
IEPGDFALPG DFDSSGTRRA ILLRSDLNVT FDDGDPRFAF ALPSGSYATV LLREFTKSGP
LDL
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