| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hlac_0553 |
|---|
| Symbol | |
|---|
| ID | 7401688 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Halorubrum lacusprofundi ATCC 49239 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_012029 |
|---|
| Strand | - |
|---|
| Start bp | 575295 |
|---|
| End bp | 575891 |
|---|
| Gene Length | 597 bp |
|---|
| Protein Length | 198 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 643707618 |
|---|
| Product | Bacterio-opsin activator HTH domain protein |
|---|
| Protein accession | YP_002565225 |
|---|
| Protein GI | 222478988 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG3413] Predicted DNA binding protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCACGACT TCCTCGACGA CGGCGACGGG TGGCGGACCG AGCTGTTGAC GTGGCGGCGA
CTCCCCGACG AGACGCTCGT CACGCTGTTC CGCGTCGTCG CCCCCCGAGA GTGGTACCTC
GAACGCCTGC GAACCGTCGA CTCGATCGAC CGCTTCGAGA CGGCTCCCGG CGACGACGCC
TTCTACCTCA AGGCGTACGA GCGGCTCGGC GGGCCGCTGG AGACGTTTTT CGATGCGTTC
GTCGACACGG AGTTCCTCTC TGTGCCGCCG GTCGTGTACC GATCGGGCGG CCGGCTGTCG
TTCGGGCTGA TCGGCCCGCC GAACCAGTTG CGGGACGTTC TCTCCGCCGT TCCAGACCCG
ATCGATGTCA CGGTCGAACG GGTCGGGTCG TACGGCGGCC GACGGTTGGC CGGCGCCAAC
CTCACGGAGC GCCAGCGAGA GGCGCTTTGC GCCGCGCGTC GCGTCGGGTA CTACGACGTG
CCCCGATCCG GTTCGGTCGC CGACGTCGCC GAGGCGATCG AGTGTTCGCC GTCGACGGCC
GGCGCCCACC TCCGCAAAGG AGAGGCGGCG CTCGTCGACA CCTATCTGGA TGGCTGA
|
|---|
| Protein sequence | MHDFLDDGDG WRTELLTWRR LPDETLVTLF RVVAPREWYL ERLRTVDSID RFETAPGDDA
FYLKAYERLG GPLETFFDAF VDTEFLSVPP VVYRSGGRLS FGLIGPPNQL RDVLSAVPDP
IDVTVERVGS YGGRRLAGAN LTERQREALC AARRVGYYDV PRSGSVADVA EAIECSPSTA
GAHLRKGEAA LVDTYLDG
|
|---|
| |