Gene Hlac_0527 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHlac_0527 
Symbol 
ID7400408 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameHalorubrum lacusprofundi ATCC 49239 
KingdomArchaea 
Replicon accessionNC_012029 
Strand
Start bp547173 
End bp550754 
Gene Length3582 bp 
Protein Length1193 aa 
Translation table11 
GC content65% 
IMG OID643707592 
Productchromosome segregation protein SMC 
Protein accessionYP_002565199 
Protein GI222478962 
COG category[D] Cell cycle control, cell division, chromosome partitioning 
COG ID[COG1196] Chromosome segregation ATPases 
TIGRFAM ID[TIGR02169] chromosome segregation protein SMC, primarily archaeal type 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value0.534964 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCACATCA CAGAAGTGGT TTTAGACGGA TTCAAGAGCT TCGGACGAAC GACGAGGATC 
CCCTTTTACG ACGACTTCAC AGTCGTCACC GGGCCGAACG GCTCGGGAAA GTCGAACATC
ATCGACGGGG TTCTCTTCGC GCTCGGCTTA GCGCGTACCC GCGGGATCAG AGCCAAGAAG
CTCACGGACC TGATCTACAA CCCCGGCCAC GACGGCGGCG AAGCCTCGGA CGGTCCGAAC
GAGGCGTCGG TGACGGTGGT CCTGTCCAAC GAGGACGGGA CTCTCGACCG CTCGCAGGTC
GTCTCCGCCG CCGGCACGGA GAACGTCGGC GGCGTCTCCG AGATCACGAT CAAACGGCGC
GTCAAAGAGA CTGAGGACAA CTACTACTCG TACTACTACC TCAACGGTCG GTCGGTGAAC
CTCTCGGACG TGCAGGACCT GCTTGCCGCC GCCGGCGTCA CGCCAGAGGG GTACAACGTC
GTGATGCAGG GCGACGTGAC CGAGATCATC AACATGACCC CCTACCAGCG CCGGGGGATC
ATCGACGAGA TCGCGGGCGT CGCCGAATTC GACGAGAAGA AGGAGGCCGC CTACGAGGAG
TTGGAGACCG TCGAAGACCG GATCGAGGAG GCCGATCTCC GGATCGGCGA GAAGCAGGAC
CGACTCGATC AGCTGGCCGA CGAGCGCGAG ACCGCCCTGC AGTATCAGCA GTTCCGCGAC
GAACTCGAGG AGTACCGCGG CTTTCTCAAA GCCTCCGAGC TGGAAGAGAA GCGCGAGACG
CTCGCAGGCG TTGAGGAGGA CATCGACGAC GACGAGACCG AACTCGAGGA ACTCCGCGCC
GAGCTTGACG CCAGGCAGGG CAAACTCACA CGGCTGGAGG AGGACTTAGC CGACCTCAAC
CACGAGATCG AGACCAAAGG CGAGGACGAA CAGATCGAGA TCCGGTCGGA GATCGAGGAG
GTGAAAGGCG AGATTTCGCG GTTGGAGGAC AAAATCGAGG CCGCCGAGGA GCGCGCCGCG
GAGGCCGAGA CCGAACGTCG CGACGCGTTC GTTCAGATCG ATCGCAAAGA AGAGACGATC
GAAGAGCTCG AATCCGAGAT CCGCGAGGCG AAAGTCGAGA AGGCCTCCGT GAAATCGGAG
ATCGCCACGA AGCGCTCGGA GCTCGCCGAC GTCGAGGCCG AGATCGAGGG CGCCGACACC
GAGTTCGACG AGCTGAAAGC CGAACTCGCG GAGAAGAAGG AGGCGATCGA GTCGCTACGG
GAGGAGAAAA ACGGGCTCCA GCGCGAGAAG GACCGCCTGC TCGACGAGGC CCGTCGGCGC
TCGAACGCGG TGAGCGAGGC GCGGACCGAC TTGGAGGACG CCCGCGAGTC GATCCCGGAG
CACAAAGCGC GGATCTCCGA GCTGCACAGC GAGCTCGACA AGGCCACGAA GAACGAGGAG
ACGATCGAGG ACGCGGTCGC TGACCTGTTC GCGGAGAAGG CCGAAACGAG CGAGCGGTTA
GAGGCGATCG AAGAGGATCT CCGCGAGAAA CAGAACGAGT ATGCGAAGCT GGAGGCCGCC
GCCGACCAGC GCGGCGACAC CTCGTGGCCC CGCGCGGTGA CCGAGGTGAA GAACGGTGGG
ATCGACGGGG TCCACGGCGC GGTCGGCGAG CTCGGATCCG TCGAGGCCGA GTACGCCGAG
GCCTGCGAGA CGGCCGCCGG CGGCAGACTC GCGAACGTCG TCGTCGACGA TGACGGCGTG
GGCTCGACGT GTATCGACTA TCTCAAGCAG CGCAATGCGG GGCGGGCGAC GTTCCTCCCC
ATCACGAAGA TGGACAACCG GAGCCTCCCG CGGAAACCCT CGGTTCCGGG CGTCGTCGAC
TTCGCGCGCA ACCTCGTCGA CTACGACAGC GAGTACGAGT CGATCTTCTC GTACGTGCTG
GGCTCCACGC TGATCGTCGA GGACATGGCG ACCGCACGGG ACCTGATGGG CGACTACCGG
ATGGTGACGC TCGACGGCGA CCTCGTCGAG AAGTCCGGTG CGATGACCGG CGGGTCGGGC
GGCGGCTCCC GCTACGCGTT CACGAAGTCC GGCGGCGGAA AGCTCGAACG GCTCGCGACT
GACATCTCGG AGCGAGAAGA TGAACGGCAG GCGCTACAGG CCGAAGTCGA CGAGCTGGAA
GACGACATCG ACGACGCCCG CGACCGGAAG GCCGACGCCG CAGAGCGCGT CCGGTCGCTG
GAGGCGGACG TCGAGCGCGC CGAAGACGAG TTGGCGGACG CCGAGGACCG CATCGACGAG
CTCAAAGCGG AGCTGGAGGA TATGGAGGCG GAACGCGAGT CGGTGGACGC GGAGATGACC
GAACTCGACG ACGAGATAGA CGATCTGAAC ACGGAGATCG ACGAACTCGA CGGCGAGATC
GAGGAGATCG AGACAGAGTT GGCCGACTCG AAGATCCCGG AGCTCTCGGA GCGTGCCGAC
GAGATCCGCG GGGAGATCTC GGACCTGGAA GACCGGATGA GTTCGCTCGA CGGGCGGCGC
AACGAGCTCG AACTGGAGAA GGGGTACACG GAGGACGCGG TCGACGACCT CCACGACACC
GTCGAGACGG CGCAAAATCG GAAGGCCGAG GCCGAAGAAG CGATCGCCGA CCACGAGGTG
ACGATAGACG AGAAGGAGGA GACGCTGGAA GCGAAACGCG AGTCGATCGC GGAGCTCGAA
GCGGAACTGA CGGAGCTGAA GGCCGACCGC GAGGACCTCC GAGAGGCGAT CACCGAGGCG
ACCCGCGAGC GCGACGAGCA GCGCTCGCTC GTCTCGGAGG CGGAGTCCGA CTTGGAAGAC
CTCACCGACC GCCGCGACCG GCTGGCGTGG GAGATCGACG AGCTGGAGTC GCAGGTCGGC
GAGTACGACG CCGACGAGAT TCCGGACCTC GACGAGGTCG AGTCGCGTAT CGAGGAGTTA
GAAGAGGAGA TGGCGGCGTT AGAGCCCGTC AACATGCTCG CGATCGACGA ATACGACGAG
GTAGAGGAGG CGCTGGAGAC GCTCCAAGAG CGCCGGGACG TCCTCGTCGA GGAGCGCGAC
GCGATCGCGG AGCGTATCGA GGGGTACGAG GCCGAAAAGA AGCGGACGTT CATGGAGACG
TTCGAGTCGA TCAACGACCA GTTCGAGGAC ATCTTCGCGC GCCTCTCGGC CGGCAGCGGC
GAGCTCCTCT TGGAGAACCC CGAGGACCCG TTCGAGGAGG GGCTGACGAT GAAGGCCCAG
CCCGCCGACA AGCCGGTCCA GCGGCTCGAC GCGATGAGCG GCGGCGAGAA GTCGCTGACC
GCGCTCTCCT TCATCTTCGC GATCCAGCGG CACAACCCCG CGCCGTTCTA CGCGCTCGAC
GAGATCGACG CGTTCCTCGA CGCGGTCAAC GCCGAGCGCG TCGGCGAGAT GATCGAGGAG
CTGGCCGAGG AGGCCCAGTT CGTCGTCGTC GGCCACCGCT CTGCGCTTCT GGAACGCTCC
GACCGCGCCA TCGGCGTCAC GATGCAGGGC GACAACCTCT CGGCGGTAAC CGGGATGCAG
TTCGGCGACG ACGGCGACGA GGAGGTGACG GCGGATGACT GA
 
Protein sequence
MHITEVVLDG FKSFGRTTRI PFYDDFTVVT GPNGSGKSNI IDGVLFALGL ARTRGIRAKK 
LTDLIYNPGH DGGEASDGPN EASVTVVLSN EDGTLDRSQV VSAAGTENVG GVSEITIKRR
VKETEDNYYS YYYLNGRSVN LSDVQDLLAA AGVTPEGYNV VMQGDVTEII NMTPYQRRGI
IDEIAGVAEF DEKKEAAYEE LETVEDRIEE ADLRIGEKQD RLDQLADERE TALQYQQFRD
ELEEYRGFLK ASELEEKRET LAGVEEDIDD DETELEELRA ELDARQGKLT RLEEDLADLN
HEIETKGEDE QIEIRSEIEE VKGEISRLED KIEAAEERAA EAETERRDAF VQIDRKEETI
EELESEIREA KVEKASVKSE IATKRSELAD VEAEIEGADT EFDELKAELA EKKEAIESLR
EEKNGLQREK DRLLDEARRR SNAVSEARTD LEDARESIPE HKARISELHS ELDKATKNEE
TIEDAVADLF AEKAETSERL EAIEEDLREK QNEYAKLEAA ADQRGDTSWP RAVTEVKNGG
IDGVHGAVGE LGSVEAEYAE ACETAAGGRL ANVVVDDDGV GSTCIDYLKQ RNAGRATFLP
ITKMDNRSLP RKPSVPGVVD FARNLVDYDS EYESIFSYVL GSTLIVEDMA TARDLMGDYR
MVTLDGDLVE KSGAMTGGSG GGSRYAFTKS GGGKLERLAT DISEREDERQ ALQAEVDELE
DDIDDARDRK ADAAERVRSL EADVERAEDE LADAEDRIDE LKAELEDMEA ERESVDAEMT
ELDDEIDDLN TEIDELDGEI EEIETELADS KIPELSERAD EIRGEISDLE DRMSSLDGRR
NELELEKGYT EDAVDDLHDT VETAQNRKAE AEEAIADHEV TIDEKEETLE AKRESIAELE
AELTELKADR EDLREAITEA TRERDEQRSL VSEAESDLED LTDRRDRLAW EIDELESQVG
EYDADEIPDL DEVESRIEEL EEEMAALEPV NMLAIDEYDE VEEALETLQE RRDVLVEERD
AIAERIEGYE AEKKRTFMET FESINDQFED IFARLSAGSG ELLLENPEDP FEEGLTMKAQ
PADKPVQRLD AMSGGEKSLT ALSFIFAIQR HNPAPFYALD EIDAFLDAVN AERVGEMIEE
LAEEAQFVVV GHRSALLERS DRAIGVTMQG DNLSAVTGMQ FGDDGDEEVT ADD