| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hlac_0414 |
|---|
| Symbol | |
|---|
| ID | 7401031 |
|---|
| Type | CDS |
|---|
| Is gene spliced | Yes |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Halorubrum lacusprofundi ATCC 49239 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_012029 |
|---|
| Strand | - |
|---|
| Start bp | 434253 |
|---|
| End bp | 435528 |
|---|
| Gene Length | 1276 bp |
|---|
| Protein Length | 424 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 643707478 |
|---|
| Product | Protein of unknown function DUF1225 |
|---|
| Protein accession | YP_002565087 |
|---|
| Protein GI | 222478850 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0675] Transposase and inactivated derivatives |
|---|
| TIGRFAM ID | [TIGR01766] transposase, IS605 OrfB family, central region |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.859835 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 0.270687 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGCGTG CCAACACTTT TGAGGTCGTG CCACAGACCG AGAACGACAA AGAGTGCCTC
CTACGGCTAC TCGATGCATC CGCTTCTCTG TGGAACGAAC TGACCTACGA ACGTCGTCAG
AACTACTTCG GTGACGGCGA CGTGTGGGAC ACTCCCGAGT ACCGAGGACG CTACAACGGC
GTCGTCGGAA GCGCGACTGT TCAACAGGTC ACGCGCAAGA ACAGCGAAGC GTGGCGGTCG
TTCTTCGCCC TCAAGGAGAA AGGCGAGTAC GCCAACCCAC CGTCGTACTG GGGCAACGAG
GAGGACGGAC GCGAACTCCG TACCTACATC CGATGCAACC AGTACACGAT TGAGTGGGGG
AAACGTAGCC GTCTCGAAAT CCCTGTCGGG CAAGAACTGA AAGACGAATA CGGACTCGGC
TACCACGAAC GACTCCGCCT CGAAGTCCGA GGCAACCCGA AGTGGGACGG CAAACAGGGT
CGTCTGGAAC TTGAGTACGA CGAGGTTAGC GACACGTTCA GGGCTTTTCA ACCAGTCACC
GTACCTGATT CTCGACTGGA TTCACCACTG GCTTCGGAAG AAGCCGCCCT CGACGTTGGA
GCGAACAATC TCGTCGCGTG TTCCACGACT ACTGGGAACC AGTACCTCTA CGACGGTCGT
GAGTTGTTCG GACGGTTCCG CGAGACGACA GACGAAATCG CCCCGCCTAC AGTCGAAACT
CCGAGAGGGT CGCTACTCCT CGAATCGGAT TCGACGGCTG TACCGACAGC GGACGAAGCG
TCGTGACCAT GCACAGAACG CGCTGGTGCG CGACCTCGTT GAACGGCTGT ACGATGAGGG
CGTGGCGACG GTGTACGTGG GCGACCTGAC AGACGTGCTG GAAGCGCATT GGTCGGTCAG
GGTGAACGAG AAGACGCACA ACTTCTGGGC GTTCAAGAAG TTCATCCACC GTCTCGCGTG
CGTCTGTGAG GAGTACGGCA TCAGCCTCGA AACCGAGTCG GAAGCGTGGA CGAGTCAGAC
GTGTCCCGAG TGTGGCGACC ACGAGAAGAC GGTTCGCCAC GAGGATACGC TGACGTGTCC
ATGTGGCTTC GAGGGGCACG CCGACCTCAC GGCGTCAGAG ACGTTCCTTC GGGAAAACAG
CAATTGCGAA ATCAGGCCGA TGGCACGGCC CGTGCGATTC GAGTGGGACG ACCACGACTG
GTCGGGGAAA CTATACCCTC ACGAAAGTCC CAAAGAAGTG CGCACGAACC CGCAAGTTGC
CTCCGTGGGT CGGTAG
|
|---|
| Protein sequence | MKRANTFEVV PQTENDKECL LRLLDASASL WNELTYERRQ NYFGDGDVWD TPEYRGRYNG
VVGSATVQQV TRKNSEAWRS FFALKEKGEY ANPPSYWGNE EDGRELRTYI RCNQYTIEWG
KRSRLEIPVG QELKDEYGLG YHERLRLEVR GNPKWDGKQG RLELEYDEVS DTFRAFQPVT
VPDSRLDSPL ASEEAALDVG ANNLVACSTT TGNQYLYDGR ELFGRFRETT DEIARLQSKL
REGRYSSNRI RRLYRQRTKR RDHAQNALVR DLVERLYDEG VATVYVGDLT DVLEAHWSVR
VNEKTHNFWA FKKFIHRLAC VCEEYGISLE TESEAWTSQT CPECGDHEKT VRHEDTLTCP
CGFEGHADLT ASETFLRENS NCEIRPMARP VRFEWDDHDW SGKLYPHESP KEVRTNPQVA
SVGR
|
|---|
| |