| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hlac_0359 |
|---|
| Symbol | |
|---|
| ID | 7399752 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Halorubrum lacusprofundi ATCC 49239 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_012029 |
|---|
| Strand | - |
|---|
| Start bp | 378983 |
|---|
| End bp | 380284 |
|---|
| Gene Length | 1302 bp |
|---|
| Protein Length | 433 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 643707424 |
|---|
| Product | ribonuclease II |
|---|
| Protein accession | YP_002565033 |
|---|
| Protein GI | 222478796 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0557] Exoribonuclease R |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 0.359815 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCAGACG ACGAGCCGAA ACCGGGGTCC GCGGAGGACC AGGGTCCCGT GACGATCACG
CCGGAGCTGG CCGACCGTCT TGCCGAGAAG CGGACGGAGC TGTTCGAGGA GTTCGAGATC
CGCGACGAAT TTCCGAACGA GGTCCTCCGC GAAGCCGAGA CCCGGACCGA GGACGTGTAC
GAGGAGATCG AAGCCGAGAT CGACGAGCGG AAGGATCTCC GTGACCTGAC AACGTGGACC
ACCGACCCGA TCGACGCGCA GGATTTCGAC GACGCCATCT CCATCGAGCG CGAGGAGGGC
GCCTACCGAC TGTGGGTCCA CATCGCCGAC GTGACCCACT ACGTCACCCC CGACACCGCG
ATGTGGGAGG AGGCGGTCAA GCGGGCCAAC ACGGTCTACC TGCCGGATTA CACGATCCAC
ATGCTTCCGC CGGTCCTCGC AGAGACCGTC TGCTCGCTCG TCCCGAACGA GGACCGGCTT
GCACACACCG TCGAGATGGA GATCGACGAC GAGACGCTCT CGTTCGAGGA CATCGACATT
TACAAGTCCG TCATCAACTC CGACGAGCGG CTCACCTACA AGGAGTGCGA GGAACGGTTG
GAAGACCCCT CTTTGCCCCT CGGCGAGGAG AACGAGCTCG CCTACGAGCT GGCCGATCGG
ATGCACGAAC AGCGCAAGGA GGACGGCTCG CTCGTGTTGA ACCCCAGTCG CGACCGCGCA
CACACCATCA TCGAGGAGTC GATGCTGAAA GCGAACAAGG CGGTGACACA CACCCTGATG
TGGGACCGCG GCGTCGAAGC GATGTACCGC GTCCACCCGC AGCCGACGCC CGACCAGTGG
AGCAAGGCGC TCCGCGAGAT CCAAGAGCTC GACGGGGTCT CGATCCCCGG CGACGCGTGG
GGCGACGACC CTCGCAAGGC CGTCAACGCC GCCTTAGAGA CGGCTCCGGA CCGCCAGCTC
AACAAGATCC AACGCGCCGT GTTGAAGGTG ATGCCCCGAG CGAAGTACAT GAACGACCCG
TTCGGCGGCC ACCACGCGCT CAACTTCGAC ATCTACGGTC ACTTTACCTC ACCCATCCGG
CGGCTCTCGG ACACGATCAA CCACTGGATC GTCCACGAGA ACGACGTGCC GGAGAACATC
CTCGAACTGT GCGATCACGC CAGTGACAAA CAGAAGGACG GCGAGACCGC GGAGCGACTT
TATAAGCAGT TCCTCCAAGA GCAGGGGCTC GACCCCTACG CGGTCAACAA CCGCGGGGTC
AAAGTCGTTG AGGACCCCGA GGAAGCGAAG CACACGATCT GA
|
|---|
| Protein sequence | MSDDEPKPGS AEDQGPVTIT PELADRLAEK RTELFEEFEI RDEFPNEVLR EAETRTEDVY
EEIEAEIDER KDLRDLTTWT TDPIDAQDFD DAISIEREEG AYRLWVHIAD VTHYVTPDTA
MWEEAVKRAN TVYLPDYTIH MLPPVLAETV CSLVPNEDRL AHTVEMEIDD ETLSFEDIDI
YKSVINSDER LTYKECEERL EDPSLPLGEE NELAYELADR MHEQRKEDGS LVLNPSRDRA
HTIIEESMLK ANKAVTHTLM WDRGVEAMYR VHPQPTPDQW SKALREIQEL DGVSIPGDAW
GDDPRKAVNA ALETAPDRQL NKIQRAVLKV MPRAKYMNDP FGGHHALNFD IYGHFTSPIR
RLSDTINHWI VHENDVPENI LELCDHASDK QKDGETAERL YKQFLQEQGL DPYAVNNRGV
KVVEDPEEAK HTI
|
|---|
| |